BAC Information

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BAC

Clone NameMSMg01-113D23
Chromosome1 (Build37)
Map Location 23,721,067 - 23,721,556
singlet/doubletsinglet
Overlap genenone
Upstream geneRims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782
Downstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113D23.T7 (MSMg01no113_d23.b1)MSMg01-113D23.TJ (MSMg01no113_d23.g1)
ACCAG325443AG325444
length798710
length of high quality
(start - end)
70 (77 - 146)490 (68 - 557)
definitionCHROMAT_FILE: MSMg01no113_d23.b1 PHD_FILE: MSMg01no113_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:37 2005CHROMAT_FILE: MSMg01no113_d23.g1 PHD_FILE: MSMg01no113_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXACTAAAGCAAAAAAATCCGCGGAAT
TCATTGGCATAGCAGAAATTGGCTCATGCTCTAAGATCAAGAATTGACAG
ATGTACCAATGTAGGGAAATTGAGGACAGGGAGGGGGGAGTGGGTAGGTG
ANTATTATCATCTTATTATTACTCCCATAAAACAATAACTTAAACTCTTT
CAATTAAACCCCTTACCCCCTATTACTTTTCTCCAACCCTTCTTTAAATC
TTCCTATAAATAATTATTTACCCTTACCTATTCTATAAAATATATACTAA
TACATCTCTTCATTCCAAAAAATCTTTTTTTTCAAAAACCTTTTAAACAA
ACTATATAAAATTTTTTAAAGTTATTATTATACACATCTTAAAAAATTAT
TTTTTTGACTCATTATACAATTTCAGTCCTCCTTTCTTTTATTATCACAT
AACCCACATACACCTGTTATTGTTTTATATAAATATATTATATTTCTACC
CATTCTATAAAATTATTACAAAAATATATGTTTCACACTCTTACACTATA
TTATATAATATACCCAAAGCACCCTATTTCAATATATCCCCCCCAAAACC
CTTTAATTTTTAAACCAATAAATTCTATTTAATTCCCAAATATAAATAAA
GTATCCGTTATTATACACAATACCCCCATTTTTTTTCTTTATTACACTCC
CACCATTACAATATTATTATTACTCTTTCATTAAATACCATCTCTACTTT
CCTACCCATTTCCTTCGTCTTCAATATTTCCAACAATATTATTATTTG
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTAAAGGACACGGAATGACAGTTGCTGTAATG
TATCCATATAAATGCAGAAAACCCACTGGTGCAACTCCAGAATATTTCAT
TACAATGATGGTGGTCTCCTAGCACATGAAGGCTAAAAGTCAAAACAGTG
AAGGATAGCTAAAACTATAATGATTCATTAAGGAATACATAATATATAGA
GGGTCATCACTGTAGTAGAAATTATCAGTAGACCAGAAGAATGGTATGTG
TTATGTAAGCATCATGTAAACAGTAAACAAAAAGCTCATTGGAGCCAAAT
AGAGAGAGAAGCACACTTCAAGTTAGCATTACAGACAACTAGCAAATCCC
AAAGAAAACTGATGGAGAAACTAGGATCCTAATCGCAATAGTAAGTCCTT
ACATACTAATAATAATGTAAAAGGATTAAATTCTCCAACCAACACTCACT
GGCTAAACGAATTTTAAAAAGCAAAACCCCACTATAAGCTGTCTTAGGAA
AGACAGGAACTGAAGGCGAAAGAATGGGGAGAAACAACCCCACGCTGGTT
GCCAGGGGCATCCAAAGGAGAGGACAGGAAGCTACACCTACAGCCAGCCA
AACAAACTTCAAGTCCTGCAACTTTACAAGAGCTGAAGAAGGCCACCATG
GGGTAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_d23.g1 MSMg01no113_d23.g1 CHROMAT_FILE:
MSMg01no113_d23.g1 PHD_FILE: MSMg01no113_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:37 2005
         (490 letters)



>mm_chr1_23720867_23721756
          Length = 890

 Score =  948 bits (490), Expect = 0.0
 Identities = 490/490 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaaggacacggaatgacagttgctgtaatgtatccatataaatgcagaaaacccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaaggacacggaatgacagttgctgtaatgtatccatataaatgcagaaaacccact 260

                                                                       
Query: 61  ggtgcaactccagaatatttcattacaatgatggtggtctcctagcacatgaaggctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgcaactccagaatatttcattacaatgatggtggtctcctagcacatgaaggctaaa 320

                                                                       
Query: 121 agtcaaaacagtgaaggatagctaaaactataatgattcattaaggaatacataatatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcaaaacagtgaaggatagctaaaactataatgattcattaaggaatacataatatat 380

                                                                       
Query: 181 agagggtcatcactgtagtagaaattatcagtagaccagaagaatggtatgtgttatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagggtcatcactgtagtagaaattatcagtagaccagaagaatggtatgtgttatgta 440

                                                                       
Query: 241 agcatcatgtaaacagtaaacaaaaagctcattggagccaaatagagagagaagcacact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcatcatgtaaacagtaaacaaaaagctcattggagccaaatagagagagaagcacact 500

                                                                       
Query: 301 tcaagttagcattacagacaactagcaaatcccaaagaaaactgatggagaaactaggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaagttagcattacagacaactagcaaatcccaaagaaaactgatggagaaactaggat 560

                                                                       
Query: 361 cctaatcgcaatagtaagtccttacatactaataataatgtaaaaggattaaattctcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctaatcgcaatagtaagtccttacatactaataataatgtaaaaggattaaattctcca 620

                                                                       
Query: 421 accaacactcactggctaaacgaattttaaaaagcaaaaccccactataagctgtcttag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accaacactcactggctaaacgaattttaaaaagcaaaaccccactataagctgtcttag 680

                     
Query: 481 gaaagacagg 490
           ||||||||||
Sbjct: 681 gaaagacagg 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)