Query= MSMg01no113_e08.b1 MSMg01no113_e08.b1 CHROMAT_FILE:
MSMg01no113_e08.b1 PHD_FILE: MSMg01no113_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:39 2005
(561 letters)
>mm_chr1_117982526_117983486
Length = 961
Score = 992 bits (513), Expect = 0.0
Identities = 555/579 (95%), Gaps = 18/579 (3%)
Strand = Plus / Minus
Query: 1 ccccatttttaatggggttatttgaatttctggagtccagcttcttgagctctttgtata 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 596 ccccatttttaatggggttatttgaatttctggagtccaccttcttgagctctttgtata 537
Query: 61 cattagatttttgtcccctatcagatttaggattggtaaaaatcctatcccaatctgttg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tattagatttttgtcccctatcagatttaggattggtaaaaatcctatcccaatctgttg 477
Query: 121 gtggcctttttgtctctggatgaataattcactcttttctagaatctagtcctgataagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gtggcctttttgtctctggatgaataattcactcttttctagaatctagtcctgataagt 417
Query: 181 ctaaagattctttggggtttagtgggaaagaatagcgccaatatggtatatggcaataaa 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 416 ctaaagattctttggggtttagtgggaaagaatagcgccaatatgttatatggcaataaa 357
Query: 241 taaggcaatat------------atatatatatgccttatttttctggactgttaatata 288
||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 356 taaggcaatatgtgtatatatatatatatatatgccttatttttctggactgttaatata 297
Query: 289 ctattttaagattttatgcaaaacattcagtctctatttttatgtttgggcatttattct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ctattttaagattttatgcaaaacattcagtctctatttttatgtttgggcatttattct 237
Query: 349 tactttactttagttcaatcataaatctttttttgttttgttttgtttt----ttttgag 404
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 236 tactttactttagttcaaacataaatctttttttgttttgttttgttttgtttttttgag 177
Query: 405 acagggtttctttgtgtagccctggctgtcctggaactcact--gtagactaggctgtca 462
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 176 acagggtttctttgtgtagccctggctgtcctggaactcactctgtagactaggctgtct 117
Query: 463 tcgaactcagaaatctgcctcccaagtgctgggattaaaggtgtgtgccaccattgccca 522
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 116 tcgaactcagaaatctgcctcccaagtgctgggattaaaggggtgtgccaccattgccca 57
Query: 523 gctcagacataaatcttaagcaaatgtataaaataacat 561
|||||||||||||||||||||||||||||||||||||||
Sbjct: 56 gctcagacataaatcttaagcaaatgtataaaataacat 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_e08.g1 MSMg01no113_e08.g1 CHROMAT_FILE:
MSMg01no113_e08.g1 PHD_FILE: MSMg01no113_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:39 2005
(504 letters)
>mm_chr1_117905721_117906626
Length = 906
Score = 890 bits (460), Expect = 0.0
Identities = 494/506 (97%), Gaps = 4/506 (0%)
Strand = Plus / Plus
Query: 1 ttcttgtttagccatgtagcagtagtaagatttttttttctcatgactgtgacctcagtc 60
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 203 ttcttgtttagcaatgtagcagtagtaagatttttttt-ctcatgactgtgacctcagtc 261
Query: 61 acatgtaatcgactacatttatagtattaggtatggattcccgtttattgagaaagtctt 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 262 acatgtaatcgactacatttatagtattaggtatggattcccatttattgagaaagtctt 321
Query: 121 atctccaatttggtggcagttagatacccatgagatataagtgacactgtgtataccctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atctccaatttggtggcagttagatacccatgagatataagtgacactgtgtataccctt 381
Query: 181 ggctatatgttattgcactgctcattctgtttcagaagctttagaactgagtaggtcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggctatatgttattgcactgctcattctgtttcagaagctttagaactgagtaggtcctt 441
Query: 241 ttattggctttcttcctttgcagcttgcctaacaaatttggatgtactgagagccctttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttattggctttcttcctttgcagcttgcctaacaaatttggatgtactgagagccctttc 501
Query: 301 atggaaagaaagattccaggttaggtttcggatttaatcctccaagtcctgtatctaaag 360
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 502 atggaaagaaagattccaggttaggtt-cggatttaatccttcaagtcctgtatctaaag 560
Query: 361 tgtgcagtgttttcagcaatcccagtatttttactgtaaaaacaatacctcagaatcgca 420
|||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||
Sbjct: 561 tgtgcagtgttttcagcaattccagtatttttacggtaaaaacaatacctcaaaatctca 620
Query: 421 tgtgctccctatcctgacacacatagtggcacacaaaaagagatctatctcagtgtggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 tgtgctccctatcctgacacacatagtggcacacaaaaagagatctatctcagtgcggag 680
Query: 481 ggtaaggaca--catctgaggttgtc 504
|||||||||| ||||||||||||||
Sbjct: 681 ggtaaggacaaacatctgaggttgtc 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 906
Length adjustment: 10
Effective length of query: 494
Effective length of database: 896
Effective search space: 442624
Effective search space used: 442624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
