Query= MSMg01no113_h10.b1 MSMg01no113_h10.b1 CHROMAT_FILE:
MSMg01no113_h10.b1 PHD_FILE: MSMg01no113_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:54 2005
(416 letters)
>mm_chr1_13445327_13446141
Length = 815
Score = 743 bits (384), Expect = 0.0
Identities = 405/414 (97%), Gaps = 5/414 (1%)
Strand = Plus / Plus
Query: 5 gaattctcccacttcagctttatgtgtgctgggactatagatgtcttctaaggcccctct 64
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattttcccacttcagctttatgtgtgctgggactatagatgtcttctaaggcccctct 264
Query: 65 tcatagggaacaaggcagtgaggccagggcaaatggttttgtttccttagcaagctcttc 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatagggaacaaggcagtgaggccagggcaaatggttttgtttccttagcaagctcttc 324
Query: 125 tttctttgggatagtttggtttcgcctttggaagagt--aaaaaaatctttgaaagcgaa 182
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 tttctttgggatagtttggtttcgcctttggaagagtaaaaaaaaatctttgaaagcgaa 384
Query: 183 ggcatttcttccaaggacagcctggctaggacatctcttagctgccacttcctgccccaa 242
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcatttcttccaaggacagcctgactaggacatctcttagctgccacttcctgccccaa 444
Query: 243 atgaacttatcatcgagaggaagaaatagtgtaagggttacagatttaaaaaacaaaaac 302
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 atgaactt---atcgagaggaagaaataatgtaagggttacagatttaaaaaacaaaaac 501
Query: 303 aaagcaacaacaacaaaagactctatgaatggagcttttaaacttggaatgctcagccat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaagcaacaacaacaaaagactctatgaatggagcttttaaacttggaatgctcagccat 561
Query: 363 tgtggatatgttaatgacatatgtctagaaaggggctttaaatgtcaggagatg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgtggatatgttaatgacatatgtctagaaaggggctttaaatgtcaggagatg 615
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 815
Length adjustment: 9
Effective length of query: 407
Effective length of database: 806
Effective search space: 328042
Effective search space used: 328042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_h10.g1 MSMg01no113_h10.g1 CHROMAT_FILE:
MSMg01no113_h10.g1 PHD_FILE: MSMg01no113_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:54 2005
(432 letters)
>mm_chr1_13518496_13519327
Length = 832
Score = 623 bits (322), Expect = 0.0
Identities = 367/400 (91%), Gaps = 29/400 (7%)
Strand = Plus / Minus
Query: 34 tattcccagagaggcagaggcaagtagatctctgtgagttggagaccagcctggtccaca 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tattcccagagaggcagaggcaagtagatctctgtgagttggagaccagcctggtccaca 773
Query: 94 tatcgagttccaggacagtcagggcttg-aaaaaaaaatcccaaataaataaataaataa 152
|| | |||||||| |||||||||||||| ||||||||||||
Sbjct: 772 tagcaagttccagaacagtcagggcttgaaaaaaaaaatcc------------------- 732
Query: 153 ataaataaataaataaataaataaatgtatatcaattcagccatagacattcccaaacct 212
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ---------taaataaataaataaatgtatatcaattcagccatagacattcccaaacct 681
Query: 213 gactgcctacatcaatcacttaaaaattgttaaataaatataaataatcatatcacaagt 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gactgcctacatcaatcacttaaaaattgttaaataaatataaataatcatatcacaagt 621
Query: 273 tatgttacagatagcaaaagaatgacataaatatttacctgtctactcccatcattggtc 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatgttacagatagcaaaagaatgacataaatatttacctgtctactcccatcattggtc 561
Query: 333 tggctaaaaagaggagctgaaattgtacacatgaccatgtggcccttacttatctttgac 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tggctaaaaagaggagctgaaattgtacacatgaccatgtggcccttacttatctttgac 501
Query: 393 tacatttcctggatgggaaggaaaggtttgcagctgccag 432
||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 tacatttcctggatgggaaggaaaggtctgcagctgccag 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space: 348129
Effective search space used: 348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
