BAC Information

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BAC

Clone NameMSMg01-113H22
Chromosome1 (Build37)
Map Location 28,857,838 - 28,858,129
singlet/doubletsinglet
Overlap geneLOC435614
Upstream geneEG433281, EG665903, Gm597
Downstream geneEG623924, EG433283, LOC100040665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113H22.T7 (MSMg01no113_h22.b1)MSMg01-113H22.TJ (MSMg01no113_h22.g1)
ACCAG325617AG325618
length730717
length of high quality
(start - end)
413 (70 - 482)293 (71 - 363)
definitionCHROMAT_FILE: MSMg01no113_h22.b1 PHD_FILE: MSMg01no113_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:56 2005CHROMAT_FILE: MSMg01no113_h22.g1 PHD_FILE: MSMg01no113_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAANGCGCGGAA
TTCAATGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTA
GCCAACACCAAAGTAAAAGGTGAGAACCTGGAAGCAATCCCACTAAAATC
AGGGACTAGACAAGGCTGCCCATTTTCTCCCTACCTCCTCAACATAGTAT
TTGAAGTTATAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGAGGATA
CAAATTTGAAAGGCAGAAGTCACAATATCACTTTTTGCAGATGATATGAT
AGTATATATAAGTGACCCTAAAAATTCCACCAAATAATTCCTAAACCTGA
TAAACAGCTTCAATGCAGTAGCTGGATATAAAATTAACTCAAACAAGTCA
ATAGCCTTTCTGTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGA
AACAACCCCTTCTCAATAGTCACAAATATCATAAAATACCTTGGCATTAC
TCTAACTAAGGAAGTGAAAGATCTGTATGATTAGAACTTCCCGTATTTAA
AGAACGAAATTAATGAAGATCTCTGAAGATAGAAAGATCTCTAACGCTCA
TGGATTGGCCGGATCAATATAGTACACACGGTTTGTTCTTGCCAACAGCC
ATCCTACAGAATTCCTTGCAATTTCATTTAAAAATTCCAAATCAATCCCT
TTCAACGAAGTATAACGGGCAATTTACTAT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGGCGTCTCTCGCCTGCAGGGGATAGGC
CCAGAGCTAAAGTGTTGAAAATAGAAGCAATCAATGACGCTTCAGCCCCA
CAAGCACGGGTGGAGGTGAAGCAGGATGCGTGTCAGCCTGTGAGTGAGAA
GGCCTCCATGAGGGCAGAGCAGACGCTGCTGTTCTGCCTCCAATTCCTGC
CAACTCCTTCCAGCTGGAGTCTGATTTTAGACAGTTGAGAAGTTCCCCAG
AGATGCTGTATTACAATCTAGTGGGGAAACCCCCACTCAATTCCCCGATT
CGGCGTGCACCCCAAAAAATCTCGAAGAACCATCTTGATGTAATTACACG
AGTTCGTCCAACTACAGAGCTCCTGATCTACTATGCATCCCTTTTTAGGA
GATAACATATGTCGTTCTCGAGGCTTGAACGTTAGGGGTTTTTATGGGGT
AAGGGGCTTACGGGTGTGGAATTTAGCATAGCGACACTTTATTGGTTTAT
TCCAACCTCATCATAATGATTACCTGTATGTGCAGGGTGCCAGAGTTCTG
TGAGTTACTGACTCCTTTCACATAGTCTTGTTATGTCTTCACATCGTTCC
TTACCGTATGGTCAAGCTGTTTCCCCGCACGGCTTTTACTATGGGCCTCC
CTCTTTTTGTCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_h22.g1 MSMg01no113_h22.g1 CHROMAT_FILE:
MSMg01no113_h22.g1 PHD_FILE: MSMg01no113_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:56 2005
         (293 letters)



>mm_chr1_28857689_28858381
          Length = 693

 Score =  534 bits (276), Expect = e-156
 Identities = 288/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggcgtctctcgcctgcaggggataggcccagagctaaagtgttgaaaatagaagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagggcgtctctcgcctgcaggggataggcccagagctaaagtgttgaaaatagaagcaa 382

                                                                       
Query: 61  tcaatgacgcttcagccccacaagcacgggtggaggtgaagcaggatgcgtgtcagcctg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tcaatgacgcttcagccccacaagcacgggtggaggtgaagcaggatgcgcgtcagcctg 322

                                                                       
Query: 121 tgagtgagaaggcctccatgagggcagagcagacgctgctgttctgcctccaattcctgc 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tgagtgagaaggcctccatgagggcaaagcagacgctgctgttctgcctccaattcctgc 262

                                                                       
Query: 181 caactccttccagctggagtctgattttagacagttgagaagttccccagagatgctgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caactccttccagctggagtctgattttagacagttgagaagttccccagagatgctgta 202

                                                               
Query: 241 ttacaatctagtggggaaacccccactcaattccccgattcggcgtgcaccc 292
           ||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaacctagtggggaaacccccactcaattccccgattcggcgtgcaccc 150


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)