Query= MSMg01no113_i14.b1 MSMg01no113_i14.b1 CHROMAT_FILE:
MSMg01no113_i14.b1 PHD_FILE: MSMg01no113_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:59 2005
(544 letters)
>mm_chr1_58714600_58715543
Length = 944
Score = 737 bits (381), Expect = 0.0
Identities = 497/549 (90%), Gaps = 30/549 (5%)
Strand = Plus / Plus
Query: 19 ttgctgtttaccctcagggggacaaaagtcacaccccaaaatgcaaggatcacccaaaaa 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ttgctgtttaccctcagggggacaaaagtcacaccccaaaatgcaaggatcacccaaaaa 271
Query: 79 gaagacccttcaaattagtctcatgtaaaaagcagaaaagagcatagc-------ccaca 131
|||||||||||||||||||||||||| ||||| | ||||||||||||| |||||
Sbjct: 272 gaagacccttcaaattagtctcatgtgaaaagtaaaaaagagcatagcacacagcccaca 331
Query: 132 gaagtccaactccagtacagagaacaccaggtctcaatggaaagccacgatataatt-gg 190
||||||| |||||||||||||| ||||||| |||||||||| ||||| ||||||||| ||
Sbjct: 332 gaagtccgactccagtacagaggacaccagttctcaatggagagccaagatataattagg 391
Query: 191 cataagaattcaaacatttctaaacatctg-aagaaagcaaatcatg-gaaaa-tgacaa 247
||||||||||||| ||||||| ||| || |||||||||||| || ||||| ||||||
Sbjct: 392 -ataagaattcaaatatttctatccat-tggaagaaagcaaat--tgtgaaaaatgacaa 447
Query: 248 aagtacagaacaactcaagagctcagccttcccgtgtgtctctccagaagagtccgtagc 307
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 448 aagtacagaacaactcaagagctcagccttcccgtgcgtctctccagaagagtccgtagc 507
Query: 308 ttcctcccagggcagtgtcgctcagcaccaggagcagtttgttacctacgatgtttgctt 367
|||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||
Sbjct: 508 ttcctcccagggcagtgtcgctcagccccaggagcagttagttacctacgatgcttgctt 567
Query: 368 tttgttgctgttgtgttcaggaacgtcagactcatacatgttgggattggcagatga--- 424
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 568 tttgttgctgttgtgttcaggaacgtcagactcatacatgttgggactggcagatgagga 627
Query: 425 ---------aatttctgaagtttcctcatttgtggttgtggttaacatcttctgcctgta 475
|| ||||||||||||||||| |||||||||||||||||||| |||| ||
Sbjct: 628 cttctcagaaacttctgaagtttcctcatatgtggttgtggttaacatct---gcctata 684
Query: 476 aaaggaatgatggtcactatatcacgaaacctcgccgggtagaggcgatgggggtatttg 535
|||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||
Sbjct: 685 aaaggaatgatggtcactatatcatgaaacctcgacgggtaaaggcgatgggggtatttg 744
Query: 536 ctggcaggt 544
|||||||||
Sbjct: 745 ctggcaggt 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_i14.g1 MSMg01no113_i14.g1 CHROMAT_FILE:
MSMg01no113_i14.g1 PHD_FILE: MSMg01no113_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:00 2005
(448 letters)
>mm_chr1_59056453_59057300
Length = 848
Score = 843 bits (436), Expect = 0.0
Identities = 445/448 (99%)
Strand = Plus / Minus
Query: 1 tttgtttagctctgtaccccattttttaatggggttatttgattttctgcagtatgtgca 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 714 tttgtttagctctgtaccccattttttaatggggttatttgattttctggagtatgtgca 655
Query: 61 ccttctaaagctaggaaatgcagaaacagaaggctgtgtcttttgatactttggatcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ccttctaaagctaggaaatgcagaaacagaaggctgtgtcttttgatactttggatcatg 595
Query: 121 gcttttccctgttaatttatataatagccatgactcataatttggaatactattcagatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gcttttccctgttaatttatataatagccatgactcataatttggaatactattcagatc 535
Query: 181 taatattgatcttaaatcagtaacttgatgtgtgtaaatctgcctttgaaagggaaaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 taatattgatcttaaatcagtaacttgatgtgtgtaaatctgcctttgaaagggaaaata 475
Query: 241 aatctaatctctgaataattcctttaaggttgtttcacatcgcaaactaataactttata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aatctaatctctgaataattcctttaaggttgtttcacatcgcaaactaataactttata 415
Query: 301 gcagtagggcaaacagctatataccacatgtaagtattctaacagctgtatagtggtaga 360
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 414 gtagtagggcaaacagctatataccacatgtaagtattctaacagttgtatagtggtaga 355
Query: 361 ataagaatttatatcattaattttagatttttctatctaaatacagtaatttagtattga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ataagaatttatatcattaattttagatttttctatctaaatacagtaatttagtattga 295
Query: 421 gctactgtgcgtgtgtgtatgtgcatgt 448
||||||||||||||||||||||||||||
Sbjct: 294 gctactgtgcgtgtgtgtatgtgcatgt 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
