BAC Information

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BAC

Clone NameMSMg01-113J13
Chromosome1 (Build37)
Map Location 132,174,937 - 132,175,496
singlet/doubletsinglet
Overlap genenone
Upstream geneThsd7b, LOC100042745, LOC100042740
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113J13.T7 (MSMg01no113_j13.b1)MSMg01-113J13.TJ (MSMg01no113_j13.g1)
ACCAG325694AG325695
length704705
length of high quality
(start - end)
565 (47 - 611)471 (71 - 541)
definitionCHROMAT_FILE: MSMg01no113_j13.b1 PHD_FILE: MSMg01no113_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:04 2005CHROMAT_FILE: MSMg01no113_j13.g1 PHD_FILE: MSMg01no113_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCG
GAATTCTTCCTGTATACGCTGAGAATTTTCCTCAGCATCACCACTAAGAA
AGAAGCTGTCCTTTCTTCTCATTCTATATTCTGTATTATAAGCCTGTTCA
AGAAATATGACCCTTCATATTTTACATAAGACCAAACCGTCACACTTACA
CCCTATTATCAGTATTTTTTTTAACTTAACATGATATATTTTTACAGGTT
TGTGCTCAGAACCTAGATCTCACAAGCTTTCCGAAAGGTGTGCTATTCCA
CTGCCCAAGGATAAATGTATCTTAAAAATTTTTCTGGAAGCATATTTCAT
GGCTTTTGGATTCTTAAGAATTTACAAATTCACAGGCACAGATCAGATAT
CTTATCTATGTTACCCCACCCGCTCAGTCACATAGCTCTTTATAATGAAC
CTGGATGCATATCTAGTCCTAGAAAGTCTTCTAAGTTTGTTTATTTTGTG
TTTTAAATATGATATAACACAGAGCTATCTTTTCTGTGAAGGCCCAGTGC
ATCCATGAGCTTGATCAGGGATGCATGCTGGTCACTTGAAAGTGTGAATT
CTTGTGACTCAGCTTGGAGATACCTCTGGGGACTGACTTAGGCTGTCATT
AATCATTCATTAACTGCACTCATTTGCAGCTTCAGTGCTAGGAGCCAATT
TAAA
TAAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAGAAGGTCTTTAATTTCTTTCTTCATTTC
TTCCCTAACCCAGAGAGTTGTTCAATTTCCATGAGAGTGTAGGCTCTGGG
TTTTTGTTGTTGTTGTTGTTGTTGAAGCTCAGTTTTAATCCATGATGGTC
TGAAAAGATACAAGGGGTTATGTCAGTTTTCTTGTATCTATTGATGCTTG
CTTTGTGACTGACTATATGGTCAATTTTGGAGAAGAACTCATGAGGTGCT
GAGAAAAATGTATATTATTTTATATTTGGTAGAAATATTCTATATATGTC
TGTTAGGTCCATTTGATTAATAATGTCGCTTGGGTTCATTACTTCTTTGC
TTAGTTTTTGTCTACATGACATAACAGTTTGTGAGAATGGGGTGTTGAAT
TCTCCCACCAATAATGTGTGAGTTTCAATTTGGGATTTAAGCTTTACCAA
TTTTTTTTTTTTACAAATTTGGATGCCTTTATGTTTGGTGCATAGATGTT
CAGAATTGAGATATATCTTGGTAGATTTCTCTTTGATGACTATGATGTGT
CCTTCCCTGACTCCTTTGATTACTTTTGGTTGAAAGTTTATATTAAATAT
TAAAATGGTTACTCCATCTTGCTTCTTGGAACCCTTTATTTGGAAAATTT
TTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_j13.b1 MSMg01no113_j13.b1 CHROMAT_FILE:
MSMg01no113_j13.b1 PHD_FILE: MSMg01no113_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:04 2005
         (565 letters)



>mm_chr1_132174734_132175696
          Length = 963

 Score =  938 bits (485), Expect = 0.0
 Identities = 543/563 (96%), Gaps = 4/563 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcctgt-atacgctgagaattttcctcagcatcaccactaagaaagaagctg 62
           |||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 763 ggaattcttcct-tcataggctgagaattttcctcaggatcaccactaagaaagaagctg 705

                                                                       
Query: 63  tcctttcttctcattctatattctgtattataagcctgttcaagaaatatgacccttcat 122
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tcctttattctcattctatattctgtattataagcctgttcaagaaatatgacccttcat 645

                                                                       
Query: 123 attttacataagaccaaaccgtcacacttacaccctattatcagtattttttttaactta 182
           |||||||||||||||||||| ||||||||  |||||||||||||||  ||||||||||||
Sbjct: 644 attttacataagaccaaaccatcacacttgtaccctattatcagta--ttttttaactta 587

                                                                       
Query: 183 acatgatatatttttacaggtttgtgctcagaacctagatctcacaagctttccgaaagg 242
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 586 acatgatatatttttacaggtttgtgctcagaacttagatctcacaagctttccgaaagg 527

                                                                       
Query: 243 tgtgctattccactgcccaaggataaatgtatcttaaaaatttttctggaagcatatttc 302
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tgtgctattccattgcccaaggataaatgtatcttaaaaatttttctggaagcatatttc 467

                                                                       
Query: 303 atggcttttggattcttaagaatttacaaattcacaggcacagatcagatatcttatcta 362
           |||||||||||||||||||||||||||| || |||||||||||| |||||||| ||||||
Sbjct: 466 atggcttttggattcttaagaatttacagatccacaggcacagaccagatatcctatcta 407

                                                                       
Query: 363 tgttaccccacccgctcagtcacatagctctttataatgaacctggatgcatatctagtc 422
           ||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 406 tgtcaccccacccgctcagtcacatagctctttataatgaaccttaatgcatatctagtc 347

                                                                       
Query: 423 ctagaaagtcttctaagtttgtttattttgtgttttaaatatgatataacacagagctat 482
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctaaaaagtcttctaagtttgtttattttgtgttttaaatatgatataacacagagctat 287

                                                                       
Query: 483 cttttctgtgaaggcccagtgcatccatgagcttgatcagggatgcatgctggtcacttg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cttttctgtgaaggcccagtgcatccatgagcttgatcagggatgcatgctggtcacttg 227

                                  
Query: 543 aaagtgtgaattcttgtgactca 565
           |||||||||||||||||||||||
Sbjct: 226 aaagtgtgaattcttgtgactca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 963
Length adjustment: 10
Effective length of query: 555
Effective length of database: 953
Effective search space:   528915
Effective search space used:   528915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)