BAC Information

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BAC

Clone NameMSMg01-113L10
Chromosome1 (Build37)
Map Location 40,768,994 - 40,769,356
singlet/doubletsinglet
Overlap geneSlc9a2
Upstream gene4933400N17Rik, LOC100042065, Map4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4
Downstream geneMfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113L10.T7 (MSMg01no113_l10.b1)MSMg01-113L10.TJ (MSMg01no113_l10.g1)
ACCAG325780AG325781
length695693
length of high quality
(start - end)
372 (44 - 415)385 (69 - 453)
definitionCHROMAT_FILE: MSMg01no113_l10.b1 PHD_FILE: MSMg01no113_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:14 2005CHROMAT_FILE: MSMg01no113_l10.g1 PHD_FILE: MSMg01no113_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCTTTTTTTGCAATTATTTGTTTCATGCCTTAACTATTTGGATTAC
TAGTTTACTTAATATGATTTACTTTCAGAAATGCACATTTTTTAATTGAA
TTATATTATAAGAATTTGTTGAAATATCTGATTTAAAATGATGCTACTAT
TTTCTGTCTGTTATGTCTGTCCAATTGCTTACTGCACTTCTTATTCTGGA
GGTATGTATTTAGTTACTATCGGAATGGAGATAAAAACATGTTTTAGCGT
TAGATGGCCTTGCTTATTCCTTTCAATACCTGAAAACAAGATTCCATAGC
ACTTATTCCATGTTCATCTCTTTTTCTCCCAATCAGGTAGGCATGACTTA
CGGAGACTATTACTCACCCTGAGGATAGCCTGCCTCTGGATCCACCTCTT
TGCCAGTTACGCATGATCACTGCACAGTATTGCCTTGCTGCCTACACGCG
ATTGTTTTGTGCTTAACTCAAGCTTGGGATATACTTGCTCATCCCAGAGA
TGCTATTATATATTTCTTCAATCCTTTTTATAATATCTAATATACATTTC
ATGTAACTGCCCACTTCCGCATCTGTTCCTACCTCACGCTAATGCTTTTA
AACCTGAGTCTCATCTACTCTCTGCTAACCCCCTGTTTCCCTTGA
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGTGGAGGGATGGGGGACACCAACTGAGCCA
CAAAACCTTTGACCCAAGTTTGTCCTGCCTACAAGATGTGTGGGGACAGG
AGCCTAGCATAACTGTCATCAGAGAAGCTTCTCCCAGCAACAGATGGAAA
CAGATGCAGAGACCCACAGCCAAACATTAGGTGGAGCTTGGTGAAGCTTT
TGGAAAAGGAGAAGGAAGGAGTGTAGGAGCCAGGGAGGTCAAGGACACCA
TAAGAAATCCCATAGAATCAACTAACCTGGGCCCATAGAAGTTCACAGAG
ACTGAACCACCAACCAGGGAGCATGTGTGGGATGGACCTAGGCCCTCTGC
ACATGTACAACACATGAGCAGCTTGGCTTTTATGTGTGGCCTCTTACGGC
AGGAGCAGGTGCTGACTCTGACGCAATTGCCTGCTTTTGGATTCCTTTCC
CTAAACTGGGCAGCCTTGTTTAGTCCTAACAGGAGAAGATGCTCCTAGTC
TTGCTCCAACTCGACATGCCCCATAGGATTACTATCCACGTGGAGGTCTA
TCTCCTTTCTGAGGACCAAGGTAGGGAGGGTTGGCAAGTTCAGAAAGCCC
CTTGGTTCGTTCCTACTCTATTGGGGTGCACTTATTTGAGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_l10.b1 MSMg01no113_l10.b1 CHROMAT_FILE:
MSMg01no113_l10.b1 PHD_FILE: MSMg01no113_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:14 2005
         (372 letters)



>mm_chr1_40768787_40769557
          Length = 771

 Score =  594 bits (307), Expect = e-174
 Identities = 352/367 (95%), Gaps = 7/367 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctttttttgca-attatttgtttcatgccttaactatttggatta-ctagtttac 65
           |||||| ||||||| | ||||||||||||||||||||||||||||||||| | |||||| 
Sbjct: 208 gaattc-ttttttgtatattatttgtttcatgccttaactatttggattagc-agtttat 265

                                                                       
Query: 66  ttaatatgatttactttcagaaatgcacattttttaattgaattatattataagaatttg 125
           |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct: 266 ttaatatgatttactttcagaaatacaca-tttttaattgaattgtattataagaatttg 324

                                                                       
Query: 126 ttgaaatatctgatttaaaatgatgctactattttctgtctgttatgtctgtccaattgc 185
           |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 ttgaaatatctgattttaaatgatgctactattttctgtctgttatatctgtccaattgc 384

                                                                       
Query: 186 ttactgcacttcttattctggaggtatgtatttagttactatcggaatggagataaaaac 245
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 ttactgcacttcttattctggaggtatgtatttagttactataggaatggagataaaaac 444

                                                                       
Query: 246 atgttttagcgtt-agatggccttgcttattcctttcaatacctgaaaacaagattccat 304
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgttttag-gtttagatggccttgcttattcctttcaatacctgaaaacaagattccat 503

                                                                       
Query: 305 agcacttattccatgttcatctctttttctcccaatcaggtaggcatgacttacggagac 364
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agcacttattccatgttcgtctctttttctcccaatcaggtaggcatgacttacggagac 563

                  
Query: 365 tattact 371
           |||||||
Sbjct: 564 tattact 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 771
Length adjustment: 9
Effective length of query: 363
Effective length of database: 762
Effective search space:   276606
Effective search space used:   276606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)