BAC Information

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BAC

Clone NameMSMg01-114D03
Chromosome1 (Build37)
Map Location 73,607,838 - 73,608,411
singlet/doubletsinglet
Overlap genenone
Upstream geneSmarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
Downstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114D03.T7 (MSMg01no114_d03.b1)MSMg01-114D03.TJ (MSMg01no114_d03.g1)
ACCAG326137AG326138
length717742
length of high quality
(start - end)
574 (73 - 646)312 (76 - 387)
definitionCHROMAT_FILE: MSMg01no114_d03.b1 PHD_FILE: MSMg01no114_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:50 2005CHROMAT_FILE: MSMg01no114_d03.g1 PHD_FILE: MSMg01no114_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGAGGCGCGGAA
TTCTTGACATTTGCCTCTAACAGAATCAGAATCTTGCTAAAAAGGAGCTT
TTTAACCTGCAGAGAGTTCTACAAGAAAAAGGCCACCTGGTCCTTGGAGC
CCCGTGAGCGAGTACAGACCATCGTTTTGAACAGAGCAGAGCAGGAGCTG
ACCTGTGTTTCCATTTTGCTTCTTTGTGTCAGTTCATGAACTATTCATAT
GCTGAGTCTTGGCAAAAGGCTTAGAGGTTTGGGTGAGTTTCATTTTGTGG
TTAGGAAGCTTGAAGGAGGTTATAATAAAATAATAGGGGTGTGATTTTAA
TTACTAAAACACCTTGGCTACTACACAGCTCATCTCTACCACACTCATGT
ACTGAAATGCTCAGAGGCTACTGAGCAGTATATATGATGTCTTTCTAGTC
CTCGAGCTGTGACTACAGGCATGGGGAAACATCTGAGAGATTTCCAACTT
TGTTCCTCTCCAAATTCTGATAGCCCTTTCCTTTCCTGTCATTTGGAATC
ATATGAATTCCTATTATGATGAGCTTTCACTTATGGGCATCTGACTTATT
TCTTCAGATATAGGAGAAGAAGAATAAGGAGGAGGAGGAGGAGGAGGAGT
AGGCACTATCTCTTTTGGTCCCTGCGCAATAATTACCCACCCGACACAAT
CTACACACGGGGGACAA
TAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCTATCAGATATCTATATTTATA
CTTATATACTAGTATAATGATAGACCTCATGAACCATATTTATGTGTGTA
CATATATTGAATGCATTTATATAAAATTTTATATAATTATATGTATTTAT
ATAAGTATATCATGCATGAAATCATATGTATGTAAATACATTAATATATT
GATATGCATTTATATGCAATTTATATCTGATTATATATTTATGTACATAC
ATACACATGAGAATATATTATATAAAAACATACATAACAAAGTTGTTATT
ATACATACACATACCCATAAATGAATATTGAAGATATGTGTATGTATAAA
TATATATAAGCATAATCCCTGAAATTTGTGTCAAATTTCCTTATGTTTTA
CATATTTATCTAGAGAGCCATAGTTTTTCCTATGTTTAGCCCACATCATT
CCCAAAATTTAACTATCATACTTTTGCGGTTTTCCGCCACTAAATTTAAC
AGGGCTGCGTCATAGTTTTGCACTCAGCTCGTATTCTTCATTTCTTTTGT
CCCTCCAACTCATGTCTGTATTCAAGATTACGATCGGCCCGCTGTCCCCT
CCTTCCTCCCCCCAATTGCAATCTTATATTGCAAATTATTGTTGCCTCCT
CATCGACTGTACTAAACCCCTTTCCTTTTTCCCCTAACCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_d03.b1 MSMg01no114_d03.b1 CHROMAT_FILE:
MSMg01no114_d03.b1 PHD_FILE: MSMg01no114_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:50 2005
         (574 letters)



>mm_chr1_73607673_73608646
          Length = 974

 Score = 1079 bits (558), Expect = 0.0
 Identities = 570/574 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatcagaatcttgctaaaaaggagctttttaacctgcagagagttctacaagaaaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaatcagaatcttgctaaaaaggagctttttaacctgcagagagttctacaagaaaaagg 680

                                                                       
Query: 61  ccacctggtccttggagccccgtgagcgagtacagaccatcgttttgaacagagcagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ccacctggtccttggagccccgtgagcgagtacagaccatcgttttgaacagagcagagc 620

                                                                       
Query: 121 aggagctgacctgtgtttccattttgcttctttgtgtcagttcatgaactattcatatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aggagctgacctgtgtttccattttgcttctttgtgtcagttcatgaactattcatatgc 560

                                                                       
Query: 181 tgagtcttggcaaaaggcttagaggtttgggtgagtttcattttgtggttaggaagcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgagtcttggcaaaaggcttagaggtttgggtgagtttcattttgtggttaggaagcttg 500

                                                                       
Query: 241 aaggaggttataataaaataataggggtgtgattttaattactaaaacaccttggctact 300
           |||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaggaggggagaataaaataataggggtgtgattttaattactaaaacaccttggctact 440

                                                                       
Query: 301 acacagctcatctctaccacactcatgtactgaaatgctcagaggctactgagcagtata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acacagctcatctctaccacactcatgtactgaaatgctcagaggctactgagcagtata 380

                                                                       
Query: 361 tatgatgtctttctagtcctcgagctgtgactacaggcatggggaaacatctgagagatt 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tatgatgtctttctagtcctagagctgtgactacaggcatggggaaacatctgagagatt 320

                                                                       
Query: 421 tccaactttgttcctctccaaattctgatagccctttcctttcctgtcatttggaatcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tccaactttgttcctctccaaattctgatagccctttcctttcctgtcatttggaatcat 260

                                                                       
Query: 481 atgaattcctattatgatgagctttcacttatgggcatctgacttatttcttcagatata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atgaattcctattatgatgagctttcacttatgggcatctgacttatttcttcagatata 200

                                             
Query: 541 ggagaagaagaataaggaggaggaggaggaggag 574
           ||||||||||||||||||||||||||||||||||
Sbjct: 199 ggagaagaagaataaggaggaggaggaggaggag 166


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)