BAC Information

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BAC

Clone NameMSMg01-114M07
Chromosome1 (Build37)
Map Location 104,072,210 - 104,072,549
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114M07.T7 (MSMg01no114_m07.b1)MSMg01-114M07.TJ (MSMg01no114_m07.g1)
ACCAG326569AG326570
length704716
length of high quality
(start - end)
519 (43 - 561)99 (203 - 301)
definitionCHROMAT_FILE: MSMg01no114_m07.b1 PHD_FILE: MSMg01no114_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:32 2005CHROMAT_FILE: MSMg01no114_m07.g1 PHD_FILE: MSMg01no114_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGGA
ATTCAATCCCCTGACCCCATTTTCAAAACTCTCAATCTTAGTGCTCTGTA
CTTATAAAGGCAGATTTCTATGGCTAACTTTCAAGTTGGCCTACCTTGAT
CAGCATTGGAAATTGGTGTTAATGTTTTCTATCTGCAGGTCCTTGTCTCC
AATGGGTTTTTGATCTCTGAAAAAAGATACCAGCTGACAATAGTTTGGCA
TGGATGGGACATTGTGCGTTCCTTTTATTAGATTCTGGAAAAATGGGGAA
GACCCCAAAAGAAGGAGACACTGTAGCAACAGGAAATAAAGACAACCAGT
CATGTGAGTTTTTGGGTAATTGGCCACTGGTCACTTCCCCTATTAGGACT
GGGGTAGCAGGGGATATTTTAGGAGTTCCTTTGAAGTAGCCAAGGTATTT
TAAAATCAACTCTCTCTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTGAGAGAGAGTGTGTGTGTGTGTGTATCTGTATTTTCCATATTT
TCCATTCATAGATCCAAGATAGTCCTGGGTAACAAGAAGCACTAAGTGGT
ACAGTCAAACCTCACCACAGCAGATGACTATAAGGTCAATGATAGATTCT
GTCTCAGAATAATTTAGATGGACAACCCCTGAGAAACTATAGGGACATTT
TTCT
GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCTTCCTCTTCATGTCCCCTTCTACTTTTATGGGTTTTTTTTTGTT
GCTGTCGCTGTTGTTGACCTAACAAACTGTATTGAAGTTACAAGCAGAAT
CATAAGAAATGGGTTGTTTGGCGCTGGAGAGATGGCTCAGTGGTTAAAAG
TACTGACTCTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAGCCACATG
GTGGCTCACAACCATCTGTAATAGGATCTGGTGCCTTCTTCTGGTGTGTC
TTAACACAGCAACAGTGTACAGATATACCTTACATAAATAATGAACAACA
CATAACGAAATGATTTACCCCCAAAAGTGTGGGCTCCACACTGTCCCCTA
CCACTATTAAACCACCTTTCTTTATCTGACCTACCATCTCTTCAATTGTC
TATATGTACGAATGGAAGTATCTTACAGATGTCTTCCCCTATGCTTCTCC
TATTTGGACCATATTACCCCCTCATGACCCTGTCCCTCCCTCCCAAGATC
CGTGTTACCCTTCTATAAGTCTTCTTTATATCCCCCCCACCATACAGGAT
CCATTATCCCCTATTTTTTCCTTTAGAGGCACTCTCTCCTCTGATTTGTA
ATACCTCATATCTCTTACTACTCCCCGCCTTTTGACCCACTGATTCTATT
TGCGCCCTTTGTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_m07.b1 MSMg01no114_m07.b1 CHROMAT_FILE:
MSMg01no114_m07.b1 PHD_FILE: MSMg01no114_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:32 2005
         (519 letters)



>mm_chr1_104072210_104073128
          Length = 919

 Score =  619 bits (320), Expect = 0.0
 Identities = 335/340 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcaatcccctgaccccattttcaaaactctcaatcttagtgctctgtacttataaa 66
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gaattcaatcccctgaggccattttcaaaactctcaatcttagtgctctgtacttataaa 281

                                                                       
Query: 67  ggcagatttctatggctaactttcaagttggcctaccttgatcagcattggaaattggtg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggcagatttctatggctaactttcaagttggcctaccttgatcagcattggaaattggtg 221

                                                                       
Query: 127 ttaatgttttctatctgcaggtccttgtctccaatgggtttttgatctctgaaaaaagat 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ttaatgttttctatctgcaggtccttgtctccaatgggtttttgatctctgaaaaaagat 161

                                                                       
Query: 187 accagctgacaatagtttggcatggatgggacattgtgcgttccttttattagattctgg 246
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 160 accagctgacaatagtttggcatggatgggacattgtgagttccttttattagattctag 101

                                                                       
Query: 247 aaaaatggggaagaccccaaaagaaggagacactgtagcaacaggaaataaagacaacca 306
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 100 aaaaatggggaagaccccaaaagaaggagacactgtagcaacaggagataaagacaacca 41

                                                   
Query: 307 gtcatgtgagtttttgggtaattggccactggtcacttcc 346
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  gtcatgtgagtttttgggtaattggccactggtcacttcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)