CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGCTCTGAACCCCATTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACATTCTTGAGTTCTTTATATATATTGGGTATTAGTCCCTT
ATCTGATTTAGGATAGGTAGAGAACCTTTCCCAACCTGTTAGTAGCCTTT
TTGTCGTATTGACGGTGTCTTTTGTGTTACAGAAGCTTTGCAATTTTATG
AGGTCTCATTTGTCGATTCTCGATCTTACAGCACAAGCCCTTGCTGTTCT
ATTCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTTCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATC
CACTTAGATTTGACCTTAGCACAAGGAGATAGGAATGGATCAATTGGCAT
TCTTCTACATGATAGCCACCAGTTGTGCCAAAACCATTTGTTGAAAATGC
AGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGA
CCATAGATGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGCC
TACTTGTCTGTCGCTATACCAGTATCATGCAGTTTTTATCACAATTGCTC
TGCTGTACAGCTTTAGATCAGGTATGGTGATTCCCCCAGTGATTCTCTTA
TCCTTGCGAAGTGGGTTGATCAGTCTTAC

NTTTCTCTCCTATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTATTCTTATTTAGG
GTACAGGCCGCAAACAATCTTGCCTATGAACAATAACTAAAGCAGAAGAA
ACTAATCACATTATTACCTCTATCCTCACCTTCCCTTCATTAAAATCAGC
ACACCTTGGCCACAGAAACATTCCAATTAATGTAAAGTGCACCATCTTTT
ATATTCGATCCCATCCTATGGGTACTGCTTTATTTTAGGTTGACTTACAC
TGTGTCTTTGCCTTGAGATCTGGAGCAAACCAATTCTGTCTGACACATTG
CCTCAGTATGATGACTGTACAACACAGCCTGGTTGGAGGTTACTCTCAGG
AGGCTTTGAAGCACCCCTAATTCCCTGTTCTCATATTCATCTCCAGCTAG
CCTTCCAGCTTCAGTGTCTTGCCTGATCCTTATGCACCAATAATACAAGG
CTTTCCCTTCCCCCTGTACCTTGCTGGAGCATCTGCCCTCACATCTGACA
ACAATCCATCCTCATGATATACCCTGGACTGACGTCTTGCTTTATCTTTG
TACTTCGCTATGAAGTTACAAGCTACACCCTAGTAACTCTTCCATCACAT
TCTGCAAAGTGTAGAGATGATCATTTCCATACTTTAACTTCAGCACTACA
TGT

Query= MSMg01no115_a09.g1 MSMg01no115_a09.g1 CHROMAT_FILE:
MSMg01no115_a09.g1 PHD_FILE: MSMg01no115_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:52 2005
         (622 letters)



>mm_chr1_11544764_11545784
          Length = 1021

 Score = 1033 bits (534), Expect = 0.0
 Identities = 600/622 (96%), Gaps = 1/622 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatttattcttatttagggtacaggccgcaaacaatcttgcctatgaacaataactaaa 60
           |||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 821 tcatttattcttatttagagtacaggccccaaacaatcttgcttatgaacaataactaaa 762

                                                                       
Query: 61  gcagaagaaactaatcacattattacctctatcctcaccttcccttcattaaaatcagca 120
           ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct: 761 gcagaagaaactaatcacattattacc-ccatcctcacctttccttcattaaaatcagca 703

                                                                       
Query: 121 caccttggccacagaaacattccaattaatgtaaagtgcaccatcttttatattcgatcc 180
           |||||||||||||||||||| ||||||||||||||| ||| ||||||||| |||||||||
Sbjct: 702 caccttggccacagaaacatcccaattaatgtaaagcgcatcatcttttacattcgatcc 643

                                                                       
Query: 181 catcctatgggtactgctttattttaggttgacttacactgtgtctttgccttgagatct 240
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 642 catcctatgggtactgctttattttaggttgacttaccctctgtctttgccttgagatct 583

                                                                       
Query: 241 ggagcaaaccaattctgtctgacacattgcctcagtatgatgactgtacaacacagcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ggagcaaaccaattctgtctgacacattgcctcagtatgatgactgtacaacacagcctg 523

                                                                       
Query: 301 gttggaggttactctcaggaggctttgaagcacccctaattccctgttctcatattcatc 360
           ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 522 gttagaggttactctcaggaggctttgaagcacccctaatttcctgttctcatattcatc 463

                                                                       
Query: 361 tccagctagccttccagcttcagtgtcttgcctgatccttatgcaccaataatacaaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tccagctagccttccagcttcagtgtcttgcctgatccttatgcaccaataatacaaggc 403

                                                                       
Query: 421 tttcccttccccctgtaccttgctggagcatctgccctcacatctgacaacaatccatcc 480
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 402 tttcccttccccatgtaccttgctggagcatatgccctcacatctgacaacaatccatcc 343

                                                                       
Query: 481 tcatgatataccctggactgacgtcttgctttatctttgtacttcgctatgaagttacaa 540
           ||||||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||
Sbjct: 342 tcatgatgtaccctggactgatgtcttgctttatctttgtactttgttatgaagttacaa 283

                                                                       
Query: 541 gctacaccctagtaactcttccatcacattctgcaaagtgtagagatgatcatttccata 600
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gctacaccctaataactcttccatcacattctgcaaagtgtagagatgatcatttccata 223

                                 
Query: 601 ctttaacttcagcactacatgt 622
            |||||||||||||||||||||
Sbjct: 222 atttaacttcagcactacatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1021
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1011
Effective search space:   618732
Effective search space used:   618732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)