BAC Information

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BAC

Clone NameMSMg01-115D19
Chromosome1 (Build37)
Map Location 94,417,869 - 94,418,075
singlet/doubletsinglet
Overlap genenone
Upstream geneTraf3ip1, Asb1, Twist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414
Downstream geneOlfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115D19.T7 (MSMg01no115_d19.b1)MSMg01-115D19.TJ (MSMg01no115_d19.g1)
ACCAG326918AG326919
length783711
length of high quality
(start - end)
---195 (131 - 325)
definitionCHROMAT_FILE: MSMg01no115_d19.b1 PHD_FILE: MSMg01no115_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:08 2005CHROMAT_FILE: MSMg01no115_d19.g1 PHD_FILE: MSMg01no115_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCTGTGTAATTATTTTTGCTTATTACTATGAATGATCCAAAATA
CTTAATGCCCTCTGCTTCCTATGTTTTCTGCTGATAATGAGATGTACAAG
GACATTAGTATATAGCACTAGTGTATACAATCTCCCCACTTATACATTCA
TGCTATTTCTTCCTCACAACGATCACCAATAGAAAGTGTATACTATACTA
TTTTGGATGATGATGATTCACAATACATGCATATCTGACGTAATTCAAGT
GATCCTCTGTGTCTGAATGCACATGTAGCACACTACTAGATATGACTCAT
GCCTACACCAGTTTAGAATTCGTCAGAATCCTCACGACTGAACACGGATG
TTGTGATTCTGAGAATGTGTGACATGCTGCTTACATGACTTTGGTCCATC
TCAGATTGCCCCTAGTGCCTACCTAGGCTGCTCAATCCCTCTGTGAAAGA
ACTAAATACCATATTATCAGGTAATGATGCATTTCCAAGGCTAAGAAGAA
AATATTTGCCCATATAGCGCACCCTGGCCGTCCGATTTTCCTGATAAAAA
TAAAATCTTATATTTGTTCCCCTACCCCCCTTTCTTTCTTTTTTATCTTT
ATTCTTCCTCTTATCCCCCCTTCCTCTTCTTCCTTTTTTACCCTCCCCCC
GTATCCCCCACCCTTTCCAGCCTCCTTCTTTACCCGCCTATATTACCCCC
ATTTATTCTTGCCCCCTCTTTCTCCGCTTCCTC
CTTTTTCCACGATGACTAGGGAGGCCTGGCGGCCGCCTGTTTCGCACGAG
GAGGTGAACTATAGAATTTGCGACAAATTCTGGGAATATCTCCAGCCCCT
GCTTCGAAAACAGCTCCCAGCTTAAGTCCGCGGCCGCCACCCAGTGGCAG
ACGCTGGAATTTGGGATTAAAAAAAAAATGTGTGCTGTAATGACAGGGCC
TCTTGTCACAATATCCAGAGTGCTACCGACCTAGACACTGCCTCTAGTTC
TGGTCGACATAAAATAATCTGAAAATTTGAAATTCCCATAAAGGCTGGGT
AAACCTCTAAGATGAATTCCCAGATTATTCNCTGAATGAACAGGAATGGC
TACCAGGATAGTGGACCTGTGTCTTTCTTCCGTGGCCGAGTACCAGAGGG
ACTGACAATCCTGTCCCCACGCGCCCAGTGTCCAAGAAGCAGCTCTCAGG
AGGTTCTTCCAGCAACCAGCTGATGAGACTGCAGATGGAAGAAGGAAGTC
TCTAGAGACTGATGAGCAGTGGCTGGGGGCAGCGGTAGTCAAGGTGGTGA
TAAGCAAGAGCCCCGTGTGGTCTTCCCACTGACTCCAGCAGCGTCCATGA
TCCCAGTTGTGCGGCCAGTGCAAATTTCGCTCTGTTGAACGAGTATGCCC
CTGTGCTACCAATTCTTTGTTTATTCTCTATTCCTTTGTCTTCCTTCTTT
TTTTTGTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_d19.g1 MSMg01no115_d19.g1 CHROMAT_FILE:
MSMg01no115_d19.g1 PHD_FILE: MSMg01no115_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:08 2005
         (195 letters)



>mm_chr1_94417631_94418225
          Length = 595

 Score =  300 bits (155), Expect = 4e-86
 Identities = 188/207 (90%), Gaps = 13/207 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   cggccgccacccagtggcagacgctggaatttgggatt-------------aaaaaaaaa 47
           ||||||||||||||||| ||||||||||||||||||||             |||||||||
Sbjct: 445 cggccgccacccagtggtagacgctggaatttgggatttaaaaaaaaaaaaaaaaaaaaa 386

                                                                       
Query: 48  atgtgtgctgtaatgacagggcctcttgtcacaatatccagagtgctaccgacctagaca 107
           | |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 385 aagtgtgctgtaatgacagggcctcttgtcaggatatccagagtgctaccgacctagaca 326

                                                                       
Query: 108 ctgcctctagttctggtcgacataaaataatctgaaaatttgaaattcccataaaggctg 167
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 ctgcctctagttctggtcggcataaaataatctgaaaatttgaaattccaataaaggctg 266

                                      
Query: 168 ggtaaacctctaagatgaattcccaga 194
           |||||||||||||||||||||||||||
Sbjct: 265 ggtaaacctctaagatgaattcccaga 239


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)