Query= MSMg01no115_f21.b1 MSMg01no115_f21.b1 CHROMAT_FILE:
MSMg01no115_f21.b1 PHD_FILE: MSMg01no115_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:18 2005
(410 letters)
>mm_chr1_78105830_78106638
Length = 809
Score = 716 bits (370), Expect = 0.0
Identities = 389/400 (97%), Gaps = 9/400 (2%)
Strand = Plus / Minus
Query: 15 ttttttgatgatgatgataggtagaaatggcgtgactgttcatcattggctagaagtaaa 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ttttttgatgatgatgataggtagaaatggcgtgactgttcatcattggctagaagtaaa 750
Query: 75 ctagatacacacatatgcacgcatgtatatgtatccattgagagccatttctatttgctt 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ctagatacacacatatgcacgcatgtatatgtatccattgagagccatttctatttgctt 690
Query: 135 ggctgaggatgtagctcagtggctgagtgcttgcctaccatgtatggagctctaggcttg 194
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 689 ggctgaggatgtagctcagtggctgagtgcttccctaccatgtatggagctctaggcttg 630
Query: 195 gtcccaatcacttcaaaaaacaaaaagaaaacaaggagaatagtcatgaaaatactaaac 254
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gtccccatcacttcaaaaaacaaaaagaaaacaaggagaatagtcatgaaaatactaaac 570
Query: 255 agtgcacggccatcaacatcatttagcctactgagaaacaggtactggaaggaattcaga 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agtgcacggccatcaacatcatttagcctactgagaaacaggtactggaaggaattcaga 510
Query: 315 aactgaatgtgatttctgtggttggtctctagacagaagaagacttcaatcggaaccccc 374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aactgaatgtgatttctgtggttggtctctagacagaagaagacttcaatcggaa----- 455
Query: 375 c----cctaccatgcgctttgcaaatgaaacttggaagtc 410
| |||||||||||||||||||||||||||||||||||
Sbjct: 454 catttcctaccatgcgctttgcaaatgaaacttggaagtc 415
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 809
Length adjustment: 9
Effective length of query: 401
Effective length of database: 800
Effective search space: 320800
Effective search space used: 320800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_f21.g1 MSMg01no115_f21.g1 CHROMAT_FILE:
MSMg01no115_f21.g1 PHD_FILE: MSMg01no115_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:18 2005
(547 letters)
>mm_chr1_77947570_77948519
Length = 950
Score = 990 bits (512), Expect = 0.0
Identities = 537/546 (98%), Gaps = 3/546 (0%)
Strand = Plus / Plus
Query: 4 aacatggtgctcatgaggaactgcagagctagtaagtaatgtgagaagtagggataacta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aacatggtgctcatgaggaactgcagagctagtaagtaatgtgagaagtagggataacta 263
Query: 64 agggtgatagtaagctgaaagcagacaggaaacttctagagaatttacaaaataaaacag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agggtgatagtaagctgaaagcagacaggaaacttctagagaatttacaaaataaaacag 323
Query: 124 aaggaaaagaaaatataatc-gaaaaaaaaaaaa--ccattcatttgacatgtagatttt 180
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 aaggaaaagaaaatataatctgaaaaaaaaaaaaaaccattcatttgacatgtagatttt 383
Query: 181 taaggtcagaacagacgtaccaagtacctaagcatttggagttagtttcggaatatttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaggtcagaacagacgtaccaagtacctaagcatttggagttagtttcggaatatttct 443
Query: 241 actctgtctctcttgctcctagtataagacaccgtgtttcaagtctatagatttgtgcag 300
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actctgccactcttgctcctagtataagacaccgtgtttcaagtctatagatttgtgcag 503
Query: 301 gctaagagcctgaaccgtccaacaccgactattaaaagaccaccacccttctttgcgagg 360
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 504 gctaagagcctgaaccgtccaacaccgactattaaaagaccaagagtcttctttgcgagg 563
Query: 361 taggttcttactgtgaagtcagggtgcttatattagatctggcaaattcaaacacctgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taggttcttactgtgaagtcagggtgcttatattagatctggcaaattcaaacacctgca 623
Query: 421 gctgttttcttttttccttttctttttaaatttacatccataatctagaatatgagaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctgttttcttttttccttttctttttaaatttacatccataatctagaatatgagaaaa 683
Query: 481 cgaatcctgactcagaaaggactgccctgttctttgtagattacccccatccctgtctgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cgaatcctgactcagaaaggactgccctgttctttgtagattacccccatccctgtctgt 743
Query: 541 acctga 546
||||||
Sbjct: 744 acctga 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 950
Length adjustment: 10
Effective length of query: 537
Effective length of database: 940
Effective search space: 504780
Effective search space used: 504780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
