BAC Information

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BAC

Clone NameMSMg01-115I22
Chromosome1 (Build37)
Map Location 155,201,614 - 155,202,001
singlet/doubletsinglet
Overlap geneEG626058
Upstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795
Downstream gene1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115I22.T7 (MSMg01no115_i22.b1)MSMg01-115I22.TJ (MSMg01no115_i22.g1)
ACCAG327160AG327161
length725795
length of high quality
(start - end)
572 (67 - 638)102 (78 - 179)
definitionCHROMAT_FILE: MSMg01no115_i22.b1 PHD_FILE: MSMg01no115_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:32 2005CHROMAT_FILE: MSMg01no115_i22.g1 PHD_FILE: MSMg01no115_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAACTCC
TTGAATTTACCGATCATATTTCTTTTCCTTTTTTATCTTCTGCAACAATG
TACAATGGAGGGTTGCTCACCATAAAGACAGCAAATTATTCTATTCAAAA
GAAATAGTACTAATTATTCAAACTCAGTGTTTGTGAATACCTTCTCCCCA
AGGGCACAGGCTTATTTCAGAGCCTTTGATTGAACAAGCCCTGATACTAT
TCTTCTAAGAGTTAAACATTCTTTTCCTTGTTTCACAATCGAGGACCTCA
CTGTCAAAAGGTCAAGTGACTTGCCAAAAGTTATAAAGTCAGTCACTGAA
GGGAAAAATAAAATCCAACCATCTAGCAATTATCTTTTCTTATTACAGAA
CAATTCTCTGCAAGCTGAATTAATTCACGAATATATTAAAAATATTTAAA
AGTGTATTTGAGGACAATGAAGCCAGTCTTGAATACAAAACAGTCAATTA
TGTTAACTTTTTTTTTATGAATTATTTTGAAAATCGATCCTGAAGGGCCT
CCAGAACCTACTTTCTGTGTTATCTTTGTTTCCTGCACATTATTTCAGTA
AACACGGGCTGCATCCTCCCAGGAGAGATGCAGGGCGGAGGTGAGACAAA
GCTGCACACCACTTAACTTGTTTTGGCCTCAGTAAGGAAACGTGGCCACT
CCAGATGTTTCCATGGTCTGAGCAN
NTTTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTACTTTTACAAGCTTTTGTTGT
GCAATCCACGTTCTTTGATTTAAAACTAATGGTTAAATAAAATTGGTTAC
AGCCGGTTCCTGGGGGAATTAAGGTCGGGTGGGTTTTCTCCCTCTTTTTC
CCCTCTTCTCTCTCCCTCCTTCTCTCCTTCTCCTCCCCTCCCTCTTCCCC
CCCCTCTTCTTCCTTCTTTCCTCTCTCCTCTCTTCCCCCTCCCCTTTCCT
TCCTCTTTCCTTCCTCTTCCCTTCTTCCTTTCTTTTTTTTCTCATCCTTC
CCTCCCTCCTTTTTCTCTCTTCTTTCTTTCCTCCCCCTCTTTCCCCCCCC
CCCTTCCTCCTCCCTCTTTTCTTCTCCTTTCCGTCCCCCCCCCCCCCTCT
CCTCCTCCCCCTCTCTCCTTCTCCCTCTTTCTCCTCTCTTCCCCTTCCCC
CTTCCTTCCTTCTTCTTTTTTCCCCCTCTTTCCCCTCCCCCTCTTCCTCC
TCCCTCTTTCCCCCTCCCTCTTTCTTTCTCCTTCTTTCCCCTTTTCCCCC
CTTCCTTCTCCCTTTTCCCCTTTTCTTTTTCTCCCCCCCCCCCCCCCCCT
CTCCTTTCTCTCCTTCTTTCCCCCCCTCTTTCCCTTCCTTTCCCCTTTTT
TTCCTCCCCCTTTCCCCCCCCCCCCTCTTCCCCCCCTTTTTCCCTTTTCT
CCCCCCCTTTCCCCCTCTCTTCCCTTTCTTTTTCTTTCTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_i22.b1 MSMg01no115_i22.b1 CHROMAT_FILE:
MSMg01no115_i22.b1 PHD_FILE: MSMg01no115_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:32 2005
         (572 letters)



>mm_chr1_155201614_155202585
          Length = 972

 Score =  743 bits (384), Expect = 0.0
 Identities = 387/388 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttcttttccttttttatcttctgcaacaatgtacaatggagggttgctcaccataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tatttcttttccttttttatcttctgcaacaatgtacaatggagggttgctcaccataaa 329

                                                                       
Query: 61  gacagcaaattattctattcaaaagaaatagtactaattattcaaactcagtgtttgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gacagcaaattattctattcaaaagaaatagtactaattattcaaactcagtgtttgtga 269

                                                                       
Query: 121 ataccttctccccaagggcacaggcttatttcagagcctttgattgaacaagccctgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ataccttctccccaagggcacaggcttatttcagagcctttgattgaacaagccctgata 209

                                                                       
Query: 181 ctattcttctaagagttaaacattcttttccttgtttcacaatcgaggacctcactgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ctattcttctaagagttaaacattcttttccttgtttcacaatcgaggacctcactgtca 149

                                                                       
Query: 241 aaaggtcaagtgacttgccaaaagttataaagtcagtcactgaagggaaaaataaaatcc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 148 aaaggtcaagtgacttgccaaaagttataaagtcagtcactgaagggaaaaaaaaaatcc 89

                                                                       
Query: 301 aaccatctagcaattatcttttcttattacagaacaattctctgcaagctgaattaattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  aaccatctagcaattatcttttcttattacagaacaattctctgcaagctgaattaattc 29

                                       
Query: 361 acgaatatattaaaaatatttaaaagtg 388
           ||||||||||||||||||||||||||||
Sbjct: 28  acgaatatattaaaaatatttaaaagtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)