Query= MSMg01no115_l02.b1 MSMg01no115_l02.b1 CHROMAT_FILE:
MSMg01no115_l02.b1 PHD_FILE: MSMg01no115_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:42 2005
(402 letters)
>mm_chr1_169736634_169737435
Length = 802
Score = 677 bits (350), Expect = 0.0
Identities = 383/394 (97%), Gaps = 2/394 (0%)
Strand = Plus / Plus
Query: 10 gaattcactgtctggatagatcagcgactattcaatgtgtgcatttttaaataaaacaga 69
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattcactgtctggatagatcagcaactattcaatgtgtgcatttttaaataaaacaga 269
Query: 70 gacaagagaaactggcgagggtaggagcaggccgtgaatcagttaacacagttttaaaag 129
||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 270 gacaagagaaactggtgagggtaggagtgggccatgaatcagttaacacagttttaaaag 329
Query: 130 taaaggcttttgtgggcatgagtaccttgcttgatttccagttcttcctcctgatggctg 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 taaaggcttttgtgggcatgagtaccttgcttgatttccagttcttcctcctgatggctg 389
Query: 190 gtgaccttgaataagcatttgagcttccccttttctgtttgtgaagtggaatgtagt-gc 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 390 gtgaccttgaataagcatttgagcttccccttttctgtttgtgaagtggaatgtggtagc 449
Query: 249 ctggcaccaaataagtgctcaattaaagcgatgtgttactatgcatatgtattggacact 308
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 450 -tggcaccaaacaagtgctcaattaaagcgatgtgttattatgcatatgtattggacact 508
Query: 309 tattctgctccttagccatcctgtacatgcactggcaaagagagtggcaaaacccaagag 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tattctgctccttagccatcctgtacatgcactggcaaagagagtggcaaaacccaagag 568
Query: 369 tgccaaacaccccaagcactttttcctgactcat 402
||||||||||||||||||||| ||||||||||||
Sbjct: 569 tgccaaacaccccaagcacttcttcctgactcat 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_l02.g1 MSMg01no115_l02.g1 CHROMAT_FILE:
MSMg01no115_l02.g1 PHD_FILE: MSMg01no115_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:42 2005
(290 letters)
>mm_chr1_169878918_169879607
Length = 690
Score = 514 bits (266), Expect = e-150
Identities = 284/290 (97%)
Strand = Plus / Minus
Query: 1 attggccatgggatggcaattgaaagttaataagcatccgaggctcatattcttaaactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 attggccatgggatggcaattgaaagttaataagcatccgaggctcatattcttaaactt 431
Query: 61 caagagctttccaaagcacattttcagtatttgtccatccactgttgcacatctaggctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 caagagctttccaaagcacattttcagtatttgtccatccactgttgcacatctaggctt 371
Query: 121 cagatctgtgctaaccagcaagtgctgcctaacatgtctaagaatgtatataccactaag 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 370 cagatctgtgctaaccagcaagtgctgcctaacatgtctaagaatgtatgtaccacaaag 311
Query: 181 gattgaagacagtgcagccatgagttgcatgtgtcacatgtctagtacacaatggagatt 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gattgaagacagtggagccatgagttgcatgtgtcacatgtctagtacacaatggagatt 251
Query: 241 ttaaaacatattgtaagaatgagcatccctcaggagattacgactgattg 290
| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 250 tcaaaacatattgcaagaatgagcatccctcaggagattaggactgattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
