BAC Information

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BAC

Clone NameMSMg01-115L12
Chromosome1 (Build37)
Map Location 82,210,982 - 82,311,556
singlet/doubletdoublet
Overlap geneIrs1
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneRhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115L12.T7 (MSMg01no115_l12.b1)MSMg01-115L12.TJ (MSMg01no115_l12.g1)
ACCAG327280AG327281
length714725
length of high quality
(start - end)
411 (46 - 456)247 (87 - 333)
definitionCHROMAT_FILE: MSMg01no115_l12.b1 PHD_FILE: MSMg01no115_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:44 2005CHROMAT_FILE: MSMg01no115_l12.g1 PHD_FILE: MSMg01no115_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,311,150 - 82,311,556)(82,210,982 - 82,211,228)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTACATGTAAACAAAGCTTAAAATTACTAAAGACTCAAAGCCAGA
CTAAGTCCTCTAACGTTTTTGTAGAAAAGCAAGTCATTGTTACATTACCT
TGTAAAAATTATAATTTTTAAGTTCTCAAAAGTATTTTACTTGTCAACTA
AGATATTATTATGCATATTCCATTTAGTATATGAAATATATTTATGGTGT
GCAGTTTTAAATTGTATCTAACCCTTGAGGGACAAGCAACAATTCTTAGC
CATTTGACTCAAATTAATGTTCATAAAATATGGTGCCTGTGTTGAAACTG
GGGGTTTGGTTACCTCCTTTGAACATTTCATAACTGGGTGGAAACTAGCA
GAAAGGCAGATACACATTCCCACCTTCCAGAATCCACCCTGAAGGAGAAA
AGATGCCTGACAACAACACAGTGTACCAAAAAACTGGATTATCCTGTAAA
GGAGGAGTTTGTTGTTATCTCTCACAGCTTCTAATGAATCAAATATATTA
CACTCAAACTGTTTCAAAAGATGGGTTACGCTGACTAGAGATTGTCTATC
ATCCTTCTTATGGAACAGCTTTCATATTAGATGATTTCGCTATGACAACT
ACCACAGGCCTAGATTGCGCCAAGTGCCGTGAAAAGATTATCACCACCTA
ACACCACACCCCCC
NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTCCGAATCG
GAGGTNGAACTATAGAAGGTTTTCCAGAATATCCCGGCCTGAAGCTTGGA
GATCCAGGTGGGTCTGAGTGTTTGCCCAAGGCCCCCTTCCCGATTGCTTA
ACATCTTGCCCGCCTTTCTGTAGACCATCATTGTCCTGGCTTTCTCTTGA
TGGTTCTAAGTTAAATGCCAGAAGTCACAGGACACAAGGACCTGTTGAAG
AAGTCTTCCTCAAATGACCCACAGTATCCAATGGGAGACCACAAGCAAGC
TACTTATTTTTCTAAATACAAGCTGAAACTTCANGTAANTTGGACTCAGA
TGCCTCTACTAAGACCCTTCTATTGCTGTTCCTGCACTCAGCAAAACCAA
CACAGAGGGAAGGGGAGTAACTAGATGCAAAGGCCCCACCTGCTTGTCGC
TGCTGTAGAGCAGTGGTGGTCTCTGGAACTAAGAGAGTTTCTCAGCTGAC
TCTTTTTCTCGTCCGTGCTTCTGTGATGGGGAATCTTTAAGATCTACTTG
GCGGCACAAGATGAGGTTTCCGGAATGGAGCCTCCTGTATCAGGTAGCTT
CTGTTCTAGAAGGACCTTATCCAGGTTTACTTATACCTGCATATGGCACT
TGGCCACTCTGCTGACTTTTTTTTTTTTTTTTATCCCCCCTGAGATATCA
TACTTAGCATACAGGGGGAAATGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_l12.b1 MSMg01no115_l12.b1 CHROMAT_FILE:
MSMg01no115_l12.b1 PHD_FILE: MSMg01no115_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:44 2005
         (411 letters)



>mm_chr1_82310946_82311756
          Length = 811

 Score =  772 bits (399), Expect = 0.0
 Identities = 405/407 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttacatgtaaacaaagcttaaaattactaaagactcaaagccagactaagtcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gaattcttacatgtaaacaaagcttaaaattactaaagactcaaagccagactaagtcct 552

                                                                       
Query: 65  ctaacgtttttgtagaaaagcaagtcattgttacattaccttgtaaaaattataattttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctaacgtttttgtagaaaagcaagtcattgttacattaccttgtaaaaattataattttt 492

                                                                       
Query: 125 aagttctcaaaagtattttacttgtcaactaagatattattatgcatattccatttagta 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 491 aagttctcaaaagtattttacttgtcagctaagatattattatgcatattccatttagta 432

                                                                       
Query: 185 tatgaaatatatttatggtgtgcagttttaaattgtatctaacccttgagggacaagcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tatgaaatatatttatggtgtgcagttttaaattgtatctaacccttgagggacaagcaa 372

                                                                       
Query: 245 caattcttagccatttgactcaaattaatgttcataaaatatggtgcctgtgttgaaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 caattcttagccatttgactcaaattaatgttcataaaatatggtgcctgtgttgaaact 312

                                                                       
Query: 305 gggggtttggttacctcctttgaacatttcataactgggtggaaactagcagaaaggcag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gggggtttggttacctcctttgaacatttcataactgggtggaaactagcagaaaggcag 252

                                                          
Query: 365 atacacattcccaccttccagaatccaccctgaaggagaaaagatgc 411
           ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atagacattcccaccttccagaatccaccctgaaggagaaaagatgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no115_l12.g1 MSMg01no115_l12.g1 CHROMAT_FILE:
MSMg01no115_l12.g1 PHD_FILE: MSMg01no115_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:44 2005
         (247 letters)



>mm_chr1_82210782_82211428
          Length = 647

 Score =  439 bits (227), Expect = e-128
 Identities = 242/247 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctgaagcttggagatccaggtgggtctgagtgtttgcccaaggcccccttcccgattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 gcctgaagcttggagatccaggtgggtctgagtgtttgcccaaggcttccttcccgattg 260

                                                                       
Query: 61  cttaacatcttgcccgcctttctgtagaccatcattgtcctggctttctcttgatggttc 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaacatcttgcccgcctttctgttgaccatcattgtcctggctttctcttgatggttc 320

                                                                       
Query: 121 taagttaaatgccagaagtcacaggacacaaggacctgttgaagaagtcttcctcaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 taagttaaatgccagaagtcacaggacacaaggacctgttgaagaagtcttccccaaatg 380

                                                                       
Query: 181 acccacagtatccaatgggagaccacaagcaagctacttatttttctaaatacaagctga 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 acccacagtatccaatgggagaccacaagcaagctacttattttcctaaatacaagctga 440

                  
Query: 241 aacttca 247
           |||||||
Sbjct: 441 aacttca 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)