Query= MSMg01no115_m08.b1 MSMg01no115_m08.b1 CHROMAT_FILE:
MSMg01no115_m08.b1 PHD_FILE: MSMg01no115_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:48 2005
(359 letters)
>mm_chr1_38273055_38273813
Length = 759
Score = 656 bits (339), Expect = 0.0
Identities = 351/355 (98%)
Strand = Plus / Plus
Query: 5 gaattccaggcttgatgctgttagagtgccctgctgttctcaagcaaaactctaggaaac 64
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggcttgatgctgttagagtgtcctgctgttctcaagcaaaactctaggaaac 264
Query: 65 ccaggagccccaggagtcaaatttcaatgtgaaaccaagacttgtcacctgtgattttaa 124
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 ccaggagccccaggagtcaaatttcaatgtgaaaccaagaattgtcacctgtgattttaa 324
Query: 125 ccagcaaagtcacaaagatttggaacctggataggaggcatttcatggaccccatgccct 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 ccagcaaagtcacaaagatttggaacctggataggaggcacttcatggaccccatgccct 384
Query: 185 tcagttcatcctcagcccgggctcctgcactggcctgggacccagtaccatcttcatcta 244
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcagttcaccctcagcccgggctcctgcactggcctgggacccagtaccatcttcatcta 444
Query: 245 ctctactctccctccttctctcctttcccccttctggcaatggggattgaacccagggct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctactctccctccttctctcctttcccccttctggcaatggggattgaacccagggct 504
Query: 305 ttgtgcatgtcaggcaagtactctagcaatggtcctaactccagctttgtcattt 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgtgcatgtcaggcaagtactctagcaatggtcctaactccagctttgtcattt 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space: 262500
Effective search space used: 262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_m08.g1 MSMg01no115_m08.g1 CHROMAT_FILE:
MSMg01no115_m08.g1 PHD_FILE: MSMg01no115_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:48 2005
(411 letters)
>mm_chr1_38333813_38334623
Length = 811
Score = 578 bits (299), Expect = e-169
Identities = 336/359 (93%), Gaps = 18/359 (5%)
Strand = Plus / Minus
Query: 59 taggctctgaggaaacacagcattgtccttttcttccttactttaaaatgccagagaaaa 118
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 811 taggctctgaggaaacacagcattgtccttttcttccttac------------gagaaaa 764
Query: 119 ggcgggcgtggtggcgcatgcctttaatcccagaactcgggaggcagaggcaggcggatt 178
||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ggcgggcatggtggcacacgcctttaatcccagaactcgggaggcagaggcaggcggatt 704
Query: 179 tctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctacacag 238
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 703 tctgagttcgaggccagcctggtctacaaagtgagttccaggacagccaggactatacag 644
Query: 239 agaaaccctgtctcaaaaaaattaa------aaaaataaaaatgccagaggaatggaact 292
||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 643 agaaaccctgtctcaaaaaaattaaaaaaataaaaataaaaatgccagaggaatggaact 584
Query: 293 gaggggcgttgtgtgctaagcaagttccccaccactgaggcgtgtattatggcatcccga 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gaggggcgttgtgtgctaagcaagttccccaccactgaggcgtgtattatggcatcccga 524
Query: 353 gccataatacatgcttattcaaatattcgattatttaaacagaaggtgagggaaaggta 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gccataatacatgcttattcaaatattcgattatttaaacagaaggtgagggaaaggta 465
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
