XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCAT
GTTGAGATGAATCATCGAGAATAAAAAAGACAAATACTACAGGATTAAAT
GTACATAACTATATGTTTGTAGGACATTAAACTGGGAGGTTACTAAAGAA
AGGTCCGAACGAAAGAGGAATAAAGAAGAATGAACCTCTACATTCAGTAT
AAATATGTATATTCACTTAAATGTATACTTTTATAGGCAAGTTCTTGAAC
ATGCTTTAGCATACACAAAAGAAAAGATAACGTTTATGAGCTGATGTGAT
ATCTGAAACACTAGCTATATGTCATTTACACTGAAAACTCTACCTACCAT
TCGGCCTATACTGTGATTTTTAGAAGGTAGGTGTGTGTCCAGTTCTCTTT
CAGACACAAGTAAAGAACTATCAAAAAATCAGGGCAGAAACATTATGAAG
ATGTTACTTTTCATGGGACATGACATTATTGGTGGAATTATACACAATAA
AACTCACAGATTCTCTCAGAAGGAATTCTAGATTCTACAGAATCTTCTGT
GGCCTGATCTATATGGCTTGGAGTCTCTCTTTGACATTTTTCATTTCACT
CCATTCCTCATTCTTTTCCAATTGCTTTTCTAAACAGTTCTCACCCTTTA
CTTATCTTAATAACGGCACCCCCAACGCCCTCCTCTCCAAGGCCTTAATT
CGCCATTTGGCCCCTTATTACACCCCCTTTTCCCTCTCCT

NNTTTTCTCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCATTGAACATC
ATTTTTAAATTGAGTTACTTGATTTTGTGGAGTTCACCTTCATGAGTTAT
TTATATATATTGGATATTAGTCCCCTATCTGATTTAGGATTTGTAAAAAT
CCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTG
CCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATCTGTTGATTCTCGAT
CTTACAACACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCGTGTGCC
CATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCT
TTGGTTTTATGTGCAGTTCCCCCACCCACTTAGACTTGATCTTTGTACAA
GGAGATAAGAATGGATCAATTCTCATTCTTCTACATGATAACCTCCAGTT
GTGCCAGCACCATTTGTTGAAAATGCTATCTTTTTTCCACTGAATGGTTT
TAGATCCCTTGTCAAAGATCAAGTAACTTTAGGTGTGCGGGCTCCACCTC
CGTTCTCTCTTTTTTCCTCCCGCTGTGCCTCTATTCCCTCTTTGTTCTCC
TCTTTCCCCGCCCGCTCTTTCCGCCCTCTCTCTTTATCCCTCTTTCTCTT
CTTTGCCTTTCCTTTTTTTTTTTTTT

Query= MSMg01no115_n19.b1 MSMg01no115_n19.b1 CHROMAT_FILE:
MSMg01no115_n19.b1 PHD_FILE: MSMg01no115_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:55 2005
         (563 letters)



>mm_chr1_104852612_104853574
          Length = 963

 Score =  737 bits (381), Expect = 0.0
 Identities = 512/561 (91%), Gaps = 14/561 (2%)
 Strand = Plus / Minus

                                                                       
Query: 10  catcatgttgagatgaatcatcgagaataaaaaagacaaatactac-ag---gattaaat 65
           ||||||| | |||||||||||| ||||  | ||||||||||||||| ||   ||||||||
Sbjct: 763 catcatggtaagatgaatcatctagaagcagaaagacaaatactacaagcttgattaaat 704

                                                                       
Query: 66  gtacataactatatgtttgtaggacattaaactgggaggttactaaagaaaggtccgaac 125
           |||||||||  | ||||||||||||||||||||||||||||||||||||||||| | || 
Sbjct: 703 gtacataac--tgtgtttgtaggacattaaactgggaggttactaaagaaaggtacaaaa 646

                                                                       
Query: 126 gaaagaggaataaagaagaatgaacctctacattcagtataaatatgtatattcacttaa 185
           |||| ||||||    |||||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct: 645 gaaaaaggaat----aagaatgaacatctacatccagtataaatatgtacattcacttaa 590

                                                                       
Query: 186 atgtatacttttataggcaagttcttgaacatgctttagcatacacaaaagaaaagataa 245
           |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 589 atgtgtacttttataggcaagttcctgaacatgctttagcatacacaaaagaaaagataa 530

                                                                       
Query: 246 cgtttatgagctgatgtgatatctgaaacactagctatatgtcatttacactgaaaactc 305
           || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 529 cgcttatgagctgatgtgatatctgaaacactagctatatgtcatttacacagaaaactc 470

                                                                       
Query: 306 tacctaccattcggcctatactgtgatttttagaaggtaggtgtgtgtccagttctcttt 365
           |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| |
Sbjct: 469 tacctaccattcggtctatactgtgatttgtacaaggtaggtgtgtgtccagttctctct 410

                                                                       
Query: 366 cagacacaagtaaa---gaactatcaaaaaatcagggcagaaacattatgaagatgttac 422
           |||| | || ||||   ||||| ||||||||||||| ||||||||||||||||| |||||
Sbjct: 409 cagagaaaaataaaaaagaactgtcaaaaaatcaggacagaaacattatgaagacgttac 350

                                                                       
Query: 423 ttttcatgggacatgacattattggtggaattatacacaataaaactcacagattctctc 482
           ||||| ||||||||| ||| || |||||||||||||||||||||||| ||||||||||||
Sbjct: 349 ttttcctgggacatggcatcataggtggaattatacacaataaaacttacagattctctc 290

                                                                       
Query: 483 agaaggaattctagattctacagaatcttctgtggcctgatctatatggcttggagtctc 542
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 289 agaaggaattctaggttctacagaatcttctgtggcctgatctatatagcttggagtctc 230

                                
Query: 543 tctttgacatttttcatttca 563
           |||||||||||||| ||||||
Sbjct: 229 tctttgacattttt-atttca 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)