CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCAATCTTCCAAAGGCTTTGGGAACAATGGCTGAAGTGTGTCA
AAGATGCAAACATTTGTCCTTATCTTGGTTGGCTACACAGGAGCTGTTAG
ATGCTTTGTTTGCTTGCTGCTCCTAAAGAGTTCTGAGTCCCAGGCCATCA
CAATCTCAGGCTCCGATCTCCTTACAGGAATCTTTCTTAGTTTATGTACT
ACTGGTCTGTCTACTTTTCTGAAGTCTCCCCAAAAGCCCTGCTTGGTTTA
TCCTATTTATTTATTCACTTTACATCTCAATATCAGCCCACATCTCCTAA
TCATCCCTCCTACAGCTCTCCCCTCCAAAGTCCTTTAAACTATCAGAATA
AATTTGTAAAGGTAGTAGTATTTAAATAGGCCTTTAAAAATGACATTTGC
AAAAACAGTATGTGCTCAAACCAGAAGGCATGGAACATAAGAGGGAGACA
GGCAGGTCACATTGCACAAGGATTAGGAAGCACAGAGTTTCAGCAGGAAG
TGTGTGTGGTGCNNGGTGGGTCCTCCCCCTCTTCTCTCTTTTTCTTCCTC
CCTCCTTCCTTCCCTACTCTCCTTTTCCCCCCTTTCCCCCCCCCTTTTCC
CCCCTCTTTTTCCCTCCCTCTTCCCCTCTCCCTATCTCTTCGCCTTTCCT
TTCTATTTGTCTCCTACCTTCCACTTTTCCCCTCTCTCCCCC

GCCCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTTAGGAATACCGAA
TGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGGGATTCCACCTCACACCAGTCAGGATGGC
TAAGATGAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGA
AGATCCAGCAATACCTCTTCTGGTCATATATCCTGCAGATGCCCCAACCG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGTATCATCC
TGAGTGAGGTAACCCAATCACAAAGGAACTCTCACAATATGTACTCACTG
ATAAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATATA
ATTTGCCAAACAC

Query= MSMg01no115_p12.b1 MSMg01no115_p12.b1 CHROMAT_FILE:
MSMg01no115_p12.b1 PHD_FILE: MSMg01no115_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:04 2005
         (486 letters)



>mm_chr1_98677492_98678371
          Length = 880

 Score =  828 bits (428), Expect = 0.0
 Identities = 468/484 (96%), Gaps = 8/484 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttcaatcttccaaaggctttgggaacaatggctgaagtgtgtcaaagatgca 63
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 680 ggaattccttcaatcttccaaaggctttgggaacaatggctgaagtttgtcaaagatgca 621

                                                                       
Query: 64  aacatttgtccttatcttggttggctacacaggagctgttagatgctttgtttgcttgct 123
           ||||||||||||||||    ||||||| ||| ||||||||||||| ||||||||||||||
Sbjct: 620 aacatttgtccttatc----ttggctagacaagagctgttagatgatttgtttgcttgct 565

                                                                       
Query: 124 gctcctaaagagttctgagtcccaggccatcacaatctcaggctccgatctccttacagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gctcctaaagagttctgagtcccaggccatcacaatctcaggctccgatctccttacagg 505

                                                                       
Query: 184 aatctttcttagtttatgtactactggtctgtctacttttctgaagtctccccaaaagcc 243
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatctttcttagcttatgtactactggtctgtctacttttctgaagtctccccaaaagcc 445

                                                                       
Query: 244 ctgcttggtttatcctatttatttattcactttacatctcaatatcag-cccacatctcc 302
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 ctgcttggtttatcctatttatttattcactttacatctcaatatcagccccacatctcc 385

                                                                       
Query: 303 taatcatccctcctacagctctcccctccaaagtcctttaaactatcagaataaatttgt 362
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 taatcatccctcctacagctctcccctccaaagtcctttaaactaccagaataaatttgt 325

                                                                       
Query: 363 aaaggtagtagtatttaaataggcctttaaaaatgacatttgcaaaaacagtatgtgctc 422
           |||||||||  | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 aaaggtagt--t-tttaaataggcctttaaaaatgacatttgcaagaacagtatgtgctc 268

                                                                       
Query: 423 aaaccagaaggcatggaacataagagggagacaggcaggtcacattgcacaaggattagg 482
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaaccagaaggcatggaacatgagagggagacaggcaggtcacattgcacaaggattagg 208

               
Query: 483 aagc 486
           ||||
Sbjct: 207 aagc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 880
Length adjustment: 10
Effective length of query: 476
Effective length of database: 870
Effective search space:   414120
Effective search space used:   414120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)