Query= MSMg01no116_b08.b1 MSMg01no116_b08.b1 CHROMAT_FILE:
MSMg01no116_b08.b1 PHD_FILE: MSMg01no116_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:14 2005
(536 letters)
>mm_chr1_93461250_93462185
Length = 936
Score = 992 bits (513), Expect = 0.0
Identities = 531/537 (98%), Gaps = 2/537 (0%)
Strand = Plus / Plus
Query: 1 aacaagctggttttgctgtgagaagctttgcaggcaggca-agcaagtcctaccaagtcc 59
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 201 aacaagctggttttgctgtgagaagctttgcaggcagg-agagcaagtcctaccaagtcc 259
Query: 60 agcttgctccctttgcatctactgctctaggcacttgggaaggcacctagtcccatccca 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agcttgctccctttgcatctactgctctaggcacttgggaaggcacctagtcccatcccc 319
Query: 120 gcaaatgcatccctgactacttgcatctctctcccttagccatggtttctgggggctact 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcaaatgcatccctgactacttgcatctctctcccttagccatggtttctgggggctact 379
Query: 180 tccctttcctgtgtctcttctgcacgttggtgacagctgttctccagtgctccatgaggt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tccctttcctgtgtctcttctgcacgttggtgacagctgttctccagtgctccatgaggt 439
Query: 240 ctgtgatcctgatcaagttctaccttaagactgacatatagattggccactcacctgtct 299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgtgatcctgatcaagttccaccttaagactgacatatagattggccactcacctgtct 499
Query: 300 ctagggctgggctgggtgctgtgagaacacgtgtgttttgggggcctggctgcagagtgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctagggctgggctgggtgctgtgagaacacgtgtgttttgggggcctggctgcagagtgc 559
Query: 360 tggtctcatgcagtaggtctcttgcctgatgattaaaccttttgtttcctctcaaagacc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tggtctcatgcagtaggtctcttgcctgatgattaaaccttttgtttcctctcaaagacc 619
Query: 420 tgggggaccagattggtgatactcacttatgaactaaaactttgaaaaatcccctgagcg 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tggaggaccagattggtgatactcacttatgaactaaaactttgaaaaatcccctgagcg 679
Query: 480 tcctaatactagtgtcttcttctgtccccattggaagaacacaacaatggcagttta 536
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 680 tcctaatactagtgtcttcttctgtccccattggtagaacacaacaatggcagttta 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_b08.g1 MSMg01no116_b08.g1 CHROMAT_FILE:
MSMg01no116_b08.g1 PHD_FILE: MSMg01no116_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:14 2005
(456 letters)
>mm_chr1_93609653_93610508
Length = 856
Score = 837 bits (433), Expect = 0.0
Identities = 451/457 (98%), Gaps = 2/457 (0%)
Strand = Plus / Minus
Query: 1 taggtaaggtgtcttctaaccaaaatgaaagtcagccacacactaatactgtca-tcccc 59
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 656 taggtaaggtgtcttccaaccaaaatgaaagtcagccacacactaataatgtcattcccc 597
Query: 60 ccccccaaatatttgaaaatcaaaggaaaatgaatataaataacttttggatcaaagggg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ccccccaaatatttgaaaatcaaaggaaaatgaatataaataacttttggatcaaagggg 537
Query: 120 ggaaaatgacacaggaaatgacaaaaatgcttgtagctgcctgattgatgaaacccttgt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ggaaaatgacacaggaaatgacaaaaatgcttgtagctgcctgattgatgaaacccttgt 477
Query: 180 gacagggagtgttgggggggcaggggaatttaagcattcgattctttaaaaagagtggct 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gacagggagtgtt-ggggggcaggggaatttaagcattcgattctttaaaaagagtggct 418
Query: 240 agctaaactcgatgatcgcagcttctgcccagaactcactgcgttctatcccatctctag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agctaaactcgatgatcgcagcttctgcccagaactcactgcgttctatcccatctctag 358
Query: 300 ggcagaagtgtcttacattgctcacagtgccgcagggctcagactgtggccactcagcct 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ggcagaagtgtcttacattgctcacagtgccgcagggctcagactgtggccactcagccc 298
Query: 360 gtgtgcttgggcagaacaacactacggtggggatgtgttacagaggctgcggctcactcc 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 297 gtgtgcttgggcagaacaacactacggtggggatgtgttacagaggctggggctcactcc 238
Query: 420 atggcaaccagaaaacagagagcaagacaggaaggag 456
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 atggcaaccagaaaacagagagcaagacaggaaggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
