Query= MSMg01no116_c03.b1 MSMg01no116_c03.b1 CHROMAT_FILE:
MSMg01no116_c03.b1 PHD_FILE: MSMg01no116_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:18 2005
(591 letters)
>mm_chr1_139817363_139818353
Length = 991
Score = 1069 bits (553), Expect = 0.0
Identities = 580/591 (98%), Gaps = 4/591 (0%)
Strand = Plus / Plus
Query: 5 gaattcatatctcaccaacagagttcctgcttattcttttcttattattcctgaatacaa 64
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcatatcagaacaacagagttcctgcttattcttttcttattattcctgaatacaa 260
Query: 65 gtttagtcattgttaggcacctaggtgtttagcatgctagcacattttacagctgcttag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttagtcattgttaggcacctaggtgtttagcatgctagcacattttacagctgcttag 320
Query: 125 ttttagtcaggaaaaccagatactgatactaaagtctttcctctcacatacatgtgcgtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttagtcaggaaaaccagatactgatactaaagtctttcctctcacatacatgtgcgtc 380
Query: 185 atccccccccc----acacacacacacaatgttcatttcacatactctaggaggctcacc 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcccccccccccccacacacacacacaatgttcatttcacatactctaggaggctcacc 440
Query: 241 tctgactcagggtgactctctgcctcctgagttcgatattcacttcattcttttttgtaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgactcagggtgactctctgcctcctgagttcgatattcacttcattcttttttgtaa 500
Query: 301 cctcctcctctggaaactcaatgtgctgtgcaccatttacagccttcatttgctctgcca 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 cctcctcctctggaaactcaatgtgctgtgcaccatttacatccttcatttgctctgcca 560
Query: 361 agaaagaactagaataacagagagttggacatgaaacatgctttctaaacaatcagcgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaagaactagaataacagagagttggacatgaaacatgctttctaaacaatcagcgaa 620
Query: 421 gttcaatctaacaaagcccctccccaatacaaagcaaagtaaagcaaagcaaacgaaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttcaatctaacaaagcccctccccaatacaaagcaaagtaaagcaaagcaaacgaaaag 680
Query: 481 tactccatcttttccattagtcatgggacgctacataattgattatttaataatgtttac 540
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 681 tactccatcttttccattagtcatgggaagctaaataattgattatttaataatgtttac 740
Query: 541 caatggcttattcttaaagcaaaagaagtgagcatcttgtatgcttgtatg 591
|||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 caatggcttattcttaaatcaaaagaagtgagcatcttgtatgcttgtatg 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_c03.g1 MSMg01no116_c03.g1 CHROMAT_FILE:
MSMg01no116_c03.g1 PHD_FILE: MSMg01no116_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:18 2005
(508 letters)
>mm_chr1_139863001_139863908
Length = 908
Score = 944 bits (488), Expect = 0.0
Identities = 503/508 (99%)
Strand = Plus / Minus
Query: 1 cctcttgcttcaagcccattttgaccaagaaatctaatgaaagatgaggggatggttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 cctcttgcttcaagcccattttgaccaagaaatctaatgaaagatgaggggatggttatt 649
Query: 61 ttctgtgtaacaatgtgacggataacggggcaggaagtaagatatttctttggttcttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttctgtgtaacaatgtgacggataacggggcaggaagtaagatatttctttggttcttcc 589
Query: 121 tcccaccagcacagcagtgcaggaagctgcgccaacccagggctacacagttgattctgg 180
||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 588 tcccaccagcacagcagagcaggaagccgtgccaacccagggctacacagttgattctgg 529
Query: 181 gcatccaacactttagcatttttaagaaatgccccatttgcaacccccaggagtatagaa 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 528 gcatccaacactttagcatttttaagaaatgccccatttgtaacccccaggagtatagaa 469
Query: 241 aagcagtattcttatataaattagtgacttcctcacagaaataggacttgatatgaattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aagcagtattcttatataaattagtgacttcctcacagaaataggacttgatatgaattg 409
Query: 301 aataaacaaacctgaaagttcagacagcagaagttaaaccgagaaacggcgttaatacct 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aataaacaaacctgaaagttcagacagcagaagttaaaccgagaaacggcgttaataccc 349
Query: 361 ccaggacctctattagggagggaacgtctgttgattgcgacagcaaaaagcggggccaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ccaggacctctattagggagggaacgtctgttgattgcgacagcaaaaagcggggccaca 289
Query: 421 gttgcattcattgttcagtgagcttttctacacagttcaacccaccgacagcaatgaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gttgcattcattgttcagtgagcttttctacacagttcaacccaccgacagcaatgaatg 229
Query: 481 ttgattgtgacctttgtaaacatagtct 508
||||||||||||||||||||||||||||
Sbjct: 228 ttgattgtgacctttgtaaacatagtct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
