BAC Information

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BAC

Clone NameMSMg01-117B23
Chromosome1 (Build37)
Map Location 90,179,373 - 90,180,015
singlet/doubletsinglet
Overlap genenone
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822
Downstream geneTrpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117B23.T7 (MSMg01no117_b23.b1)MSMg01-117B23.TJ (MSMg01no117_b23.g1)
ACCAG328335
length735733
length of high quality
(start - end)
---642 (69 - 710)
definitionCHROMAT_FILE: MSMg01no117_b23.b1 PHD_FILE: MSMg01no117_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:34 2005CHROMAT_FILE: MSMg01no117_b23.g1 PHD_FILE: MSMg01no117_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
ACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATGCTCCCTTCCTTTCTTTGTGTAGGTTAGA
TCATCTAGTACTTTCTGCTTCCTGCTTTATGCTTCTGCAGCATCCACTCC
TAGATCTGTTTACAGGCTTACATTTACAAGGTTTGACTTTCACGTTTGGC
ACTGACTTTATTCACGATTGCTTTAATGCTTCATTGTTATCCGACTTATG
GAACTACCTGCTTGGTTACTCTCTGTGCGCTGAATCGCAATGTGAGAGTT
TTAGACTAGGTTTGCTCTCCCAACCTACTGCATTGTGCAGCAAGTTTAAG
CAGGATTCTGGTCATTATGCCTGGGCTCAAGGTCCCCAACCTCTTTCATA
TGGACTTTTGAAGAACATTCCAGATGCAAACCATGGCGTCCATTCTGAGC
AACCCTCAGAGTTATCAGTGAGTCTCATGATGCTCTTATTACATGTTTTG
TCTTGGATAATATGATGGGATTGACTGGTGGCTCCAAAGGCAATCTACTT
CCATTTAGTAATAACAGTAACGTGCCCACTGAGCAGAATATGCTAAGGGC
TTTGGATCTATTGATCTTTTCATTGTCCCACTAAAGGAGGGAGGGACTTG
TGTTGAGATTCCAATTCCGCAATCTGTAACCCAGGCTACTCTGGGCAATG
TGTCTGAGTCTCAGTGATGCCATTCATAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_b23.g1 MSMg01no117_b23.g1 CHROMAT_FILE:
MSMg01no117_b23.g1 PHD_FILE: MSMg01no117_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:34 2005
         (642 letters)



>mm_chr1_90179173_90180215
          Length = 1043

 Score = 1120 bits (579), Expect = 0.0
 Identities = 627/643 (97%), Gaps = 1/643 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgctcccttcctttctttgtgtaggttagatcatctagtactttctgcttcctgcttt 60
           |||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgctccctccctttcattgtataggttagatcatctagtactttctgcttcctgcttt 260

                                                                       
Query: 61  atgcttctgcagcatccactcctagatctgtttacaggcttacatttacaaggtttgact 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 atgcttctgcagcatccactcctagatctgtttacaggcttacgtttacaaggtttgact 320

                                                                       
Query: 121 ttcacgtttggcactgactttattcacgattgctttaatgcttcattgttatccgactta 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcacgtttggcgctgactttattcacgattgctttaatgcttcattgttatccgactta 380

                                                                       
Query: 181 tggaactacctgcttggttactctctgtgcgctgaatcgcaatgtgagagttttagacta 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tggaactacctgcttggttactctctgtgtgctgaatcgcaatgtgagagttttagacta 440

                                                                       
Query: 241 ggtttgctctcccaacctactgcattgtgcagcaagtttaagcaggattctggtcattat 300
           |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 ggtttgctctcccaacctacagcattgtgcagcaagtttaagtaggattctggtcattat 500

                                                                       
Query: 301 gcctgggctcaaggtccccaacctctttcatatggacttttgaagaacattccagatgca 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctgggctcaaggtccccaacccctttcatatggacttttgaagaacattccagatgca 560

                                                                       
Query: 361 aaccatggcgtccattctgagcaaccctcagagttatcagtgagtctcatgatgctctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccatggcgtccattctgagcaaccctcagagttatcagtgagtctcatgatgctctta 620

                                                                       
Query: 421 ttacatgttttgtcttggataatatgatgggattgactggtggctccaaaggcaatctac 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 ttacatgttttgtcttggataatatgatgggattgactggtggctccaaaggcaatttac 680

                                                                       
Query: 481 ttccatttagtaataacagtaacgtgcccactgagcagaatatgctaagggctttggatc 540
           ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 681 ttccatttagtaataacagtaacatgcccactgagtagaatgtgctaagggctttggatc 740

                                                                       
Query: 541 tattgatcttttcattgtcccactaaaggagggagg-gacttgtgttgagattccaattc 599
           ||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||
Sbjct: 741 tattgatcttttcattgtctcactaaaggagggaggtgacttgtgttgagatcccaattc 800

                                                      
Query: 600 cgcaatctgtaacccaggctactctgggcaatgtgtctgagtc 642
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cgcaatctgtaacccaggctactctgggcaatgtgtctgagtc 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space:   652856
Effective search space used:   652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)