BAC Information

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BAC

Clone NameMSMg01-117G20
Chromosome1 (Build37)
Map Location 8,535,401 - 8,535,727
singlet/doubletsinglet
Overlap geneSntg1
Upstream geneLOC665063, LOC665069, LOC100039408
Downstream geneLOC100039474, LOC620444, EG665007, LOC665103, LOC100039464, EG620853, LOC665138, Rrs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117G20.T7 (MSMg01no117_g20.b1)MSMg01-117G20.TJ (MSMg01no117_g20.g1)
ACCAG328562AG328563
length725723
length of high quality
(start - end)
602 (69 - 670)327 (330 - 656)
definitionCHROMAT_FILE: MSMg01no117_g20.b1 PHD_FILE: MSMg01no117_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:59 2005CHROMAT_FILE: MSMg01no117_g20.g1 PHD_FILE: MSMg01no117_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAGAATTTGCGGCGCTATACGACTCCTATAGTCAGAAATCCGCGGAATT
CTTTGTTTATTTCCGAATCCCAATTTTAATAGGGTTATTTGGTTCTTTGG
TTCTTGACTTCTCTTTATATATTGGGTATTAGCTCTCAATCAGATGTAGG
ATTGGTAAAGATATTTTTCCAATCTGGTAATTGCATTTTTATCCTATTGA
CAGTGTCCTTTGCTTTACAAGAGCTTTACAATTTTATGATGTCTCACTTG
CTGATTCTTAGAGCATAGGCAATTGGTGTTCTGTTTAGGAAATTTTGCCC
TGTGCCCATATCTTAGATGTTCTTCCCCACTTTCTCCTTTATTAAGTTTC
AGTGTCTCTGGTTTTATGTGGAGTCCCTTGATTCACTTGGACTTGAGCTT
TGAACAAGGAGATAGGAACGAATCAATTAGCATTCTTCTATGTGCTAATC
GCCAGTTGAGTCAGCATCATTTGTTGAAAATACTGTCTTTTTTTCCACGG
GATAGTTTAAAGTCCTTTGTCAAAGATCAAGTGACCATAGGTGTATGTGT
TCATTTCTGGGTTTTTTTTTTTTAATTCTATTGATCTACCTGCCTGTTAC
TGTACCAATACTGTGAAGTTTTTATCACAATTGCTCTAAGTACAGCTTAG
GAGAGGGATGGTGATTCGCCCAGAAGTTTTTTTATTGTTGAGAATAGTTT
TCACTATCGTACGTTTTTTGCTATA
CGATGAAGTGGGAGGCCTGGCGGCGCCTGGCATCGAATCGGGGTGAACTA
TAGAAGGACTTGCCAAATCATGCTTCCTTTCTGTCACTTTTCATAAATCC
TGTAATATAATATGCAATATCCTAGAACACAGTGATTTAACTTCAGTTCT
TCATATGAAGGGAGAGATTGGAGCATTAGAAACAGAAATTGGGAGTATTC
TTTCTATGCTTATGACATTCAGCATTCATTATGTTTGGTTATGTAAACCT
AAATTAGCCTGTAGATTCTCATGACTTTGAAAACAGAATGTGTAACTTCT
TTGGAAGGAAGTTGGAGTATGNTTTCTTACTCTCAGATTAGTACAGCTAT
GGAGTACAGTCTTAGGCAACTACGCAATGCCTACATTTAAGTGTACAACT
GGATTGTTTATCTGACAGAAGTTACATATCATGCTGTTCAGAAATGAAAC
AGGTGCAGTTTAGAAATGAAAGCAATAAATCTGGCTTAGAATTTAGTTCA
CAGAGGGGCTAAATGCTTAGGAATTTTGGAAGAGAAAACATAATAGGAAG
TGGTAAAGTGATGTAAGTGAGGAGGCCAAAGTGAAGGAAGATGTGTTCTA
ACTGTATTTGAGCATACATTAGTAATCAGTGAATATAGGTGTTGTAAAGA
TATAGTATTGTCAACTCATCATAGAGGATTGAGTTATATACTTATAAAAT
ATATGTCTATCAAACTATTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_g20.g1 MSMg01no117_g20.g1 CHROMAT_FILE:
MSMg01no117_g20.g1 PHD_FILE: MSMg01no117_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:59 2005
         (327 letters)



>mm_chr1_8535201_8535927
          Length = 727

 Score =  632 bits (327), Expect = 0.0
 Identities = 327/327 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctcagattagtacagctatggagtacagtcttaggcaactacgcaatgcctacattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ctctcagattagtacagctatggagtacagtcttaggcaactacgcaatgcctacattta 468

                                                                       
Query: 61  agtgtacaactggattgtttatctgacagaagttacatatcatgctgttcagaaatgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 agtgtacaactggattgtttatctgacagaagttacatatcatgctgttcagaaatgaaa 408

                                                                       
Query: 121 caggtgcagtttagaaatgaaagcaataaatctggcttagaatttagttcacagaggggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 caggtgcagtttagaaatgaaagcaataaatctggcttagaatttagttcacagaggggc 348

                                                                       
Query: 181 taaatgcttaggaattttggaagagaaaacataataggaagtggtaaagtgatgtaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 taaatgcttaggaattttggaagagaaaacataataggaagtggtaaagtgatgtaagtg 288

                                                                       
Query: 241 aggaggccaaagtgaaggaagatgtgttctaactgtatttgagcatacattagtaatcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aggaggccaaagtgaaggaagatgtgttctaactgtatttgagcatacattagtaatcag 228

                                      
Query: 301 tgaatataggtgttgtaaagatatagt 327
           |||||||||||||||||||||||||||
Sbjct: 227 tgaatataggtgttgtaaagatatagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)