BAC Information

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BAC

Clone NameMSMg01-117P17
Chromosome1 (Build37)
Map Location 81,742,748 - 81,743,187
singlet/doubletsinglet
Overlap genenone
Upstream geneDock10, LOC665092, 9430031J16Rik, EG621020, LOC433328
Downstream geneEG665145, Irs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117P17.T7 (MSMg01no117_p17.b1)MSMg01-117P17.TJ (MSMg01no117_p17.g1)
ACCAG328974AG328975
length736737
length of high quality
(start - end)
612 (42 - 653)618 (69 - 686)
definitionCHROMAT_FILE: MSMg01no117_p17.b1 PHD_FILE: MSMg01no117_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:41 2005CHROMAT_FILE: MSMg01no117_p17.g1 PHD_FILE: MSMg01no117_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTCCCCCCTTCCCGTACAGCTCTAATATGACAGATGCTCTCAGAAGGT
CTTTGACGAAGTAATTCACACACCTTTATTCCTTGTGGTCGGGTTCTTAT
ATACATTTTGGGGTCAGTAGTGGTCTAAAAGCAGATGTTTCCTATTGGCT
TGATCTGAGATGTTAGAATGCCTCATCTGCATATGGTGACGCTTGGGTGC
TACCCCTATGTGACTGACTGCGAAGATCCTCTCCACAGGGTGCCAGTGGT
CACATGAAAGGGACCTGGTGAGGAGTAGGTGAAATGCCTACCATCCTCAG
GTCTCAGGGTCCTAGGGTTTCTGAATCCACTCAACCTGCAAGTTTCCTGG
CATGGCCTACTGGCCCATAGGTGTGTTTCCATGGTTTCTTATGATGGTAG
AGGAGGGAGGATACAGATGTGAGAAACATGAATAAATATGCATTTAATAG
TATAAAGAATCTGTATTCATGTGTGTGCACATGTGCCTGGGAGGGGGAGG
ATTACAATTATTATATTTTCTCATGGTTTACACAGGAAGCAAACTGAAAC
ATGAATCCACTATGCTAGAGTCATGGTCATGTGCTTTCATGAGCATTTCC
CTGCCATTAATGCCTTAAGCCAAGAACTATTAAGTAAGGGTTTTATGAAG
TCAGATCTTTTTTTTTTTTCTTCTTCTTTTCTTTTT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGCCGNAAACTCACCTGAGGAATACCGAATGGCAGAGAAGCAC
CTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATTCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGAGTGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGATTGCAGGCGTGTACAACCACTCTGGAAATCAGTCTG
GCTGTTCCTCAGAAAATTGGATTTTTTACTACCAGAGGATCCAGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGCCTCAAGTGGTAAGAAGGACACA
TGCTCCACTATCTTCATAGCAGCCTTATTTATAATAGCGAGAAGCTGGAA
AGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTATA
TCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA
TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC
ACATTCACAAAGGAACTCCCACAATATGTACTCACTGATAAGTGGATATT
AGCCCTGAACCTAGGATTCCCAAGATATAAGATACCATTTGCTAAACACA
TGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_p17.b1 MSMg01no117_p17.b1 CHROMAT_FILE:
MSMg01no117_p17.b1 PHD_FILE: MSMg01no117_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:41 2005
         (612 letters)



>mm_chr1_81742176_81743187
          Length = 1012

 Score =  804 bits (416), Expect = 0.0
 Identities = 434/440 (98%), Gaps = 1/440 (0%)
 Strand = Plus / Minus

                                                                        
Query: 174  agaatgcctcatctgcatatggtgacgcttgggtgctacccctatgtgactgactgc-ga 232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1012 agaatgcctcatctgcatatggtgacgcttgggtgctacccctatgtgactgactgcgga 953

                                                                        
Query: 233  agatcctctccacagggtgccagtggtcacatgaaagggacctggtgaggagtaggtgaa 292
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952  agatcctctccacggggtgccagtggtcacatgaaagggacctggtgaggagtaggtgaa 893

                                                                        
Query: 293  atgcctaccatcctcaggtctcagggtcctagggtttctgaatccactcaacctgcaagt 352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892  atgcctaccatcctcaggtctcagggtcctagggtttctgaatccactcaacctgcaagt 833

                                                                        
Query: 353  ttcctggcatggcctactggcccataggtgtgtttccatggtttcttatgatggtagagg 412
            ||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||
Sbjct: 832  ttcctggcatggcctactgacccataggtgtgtttccatggtttcttgggatggtagagg 773

                                                                        
Query: 413  agggaggatacagatgtgagaaacatgaataaatatgcatttaatagtataaagaatctg 472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772  agggaggatacagatgtgagaaacatgaataaatatgcatttaatagtataaagaatctg 713

                                                                        
Query: 473  tattcatgtgtgtgcacatgtgcctgggagggggaggattacaattattatattttctca 532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 712  tattcatgtgtgtgcacatgtgcctgggagggggaggattacaattattatattttctcg 653

                                                                        
Query: 533  tggtttacacaggaagcaaactgaaacatgaatccactatgctagagtcatggtcatgtg 592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652  tggtttacacaggaagcaaactgaaacatgaatccactatgctagagtcatggtcatgtg 593

                                
Query: 593  ctttcatgagcatttccctg 612
            ||||||||||||||||||||
Sbjct: 592  ctttcatgagcatttccctg 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)