BAC Information

Click to search

BAC

Clone NameMSMg01-118A18
Chromosome1 (Build37)
Map Location 74,281,768 - 74,282,058
singlet/doubletsinglet
Overlap genenone
Upstream genePinc, LOC672208, LOC100043291, Tns1, Rufy4, Il8rb, Il8ra
Downstream geneArpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118A18.T7 (MSMg01no118_a18.b1)MSMg01-118A18.TJ (MSMg01no118_a18.g1)
ACCAG329022AG329023
length675687
length of high quality
(start - end)
299 (58 - 356)290 (72 - 361)
definitionCHROMAT_FILE: MSMg01no118_a18.b1 PHD_FILE: MSMg01no118_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:46 2005CHROMAT_FILE: MSMg01no118_a18.g1 PHD_FILE: MSMg01no118_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTATACGACTCCTATTTCGAGAGATCCGCGGAATTCACTGTGCT
ACCATGACTGCTCTGGAATTCACCATGTAGCTAGCCATGAAGCTGGCCTT
GAACTCAGAGATCCACCCACCTCTGCCTTTGAGTGCCGGGATTTCAGGCC
CAGGCCACCATGCTGGGTCACATCCAGATTTTTATGTGGGTTCCACTGGT
GGAACTGGGGTCCTCAGGTTTGCACAGCTAACACTTTTACACATGAGCCA
TTCCCCCCGCCCCACCGCCCCTCCCCCCAGCCCCAGAAAGCCAACACATG
AAATAGTGTTTCAAAATACAATGGACCTAGGGCGACTTCAGCTTCACTCT
ATATAATGCACATAAATTATAATATATAATTAAGTATCCAATTACCAACT
AACAAGCATATATTACTGGTATGATTTCATTTTGAGAATACATTGGAATT
ATAAAGATCTATTTCAAGAAAATGCTTGGCAGGGACTGGGTGAAGCCTCT
GGGAGAGTGTGTGAGGCCCTGGGACAGAGAAACTAAGATAATTTTGTTGT
GGTGGTTTTATTTCACTTTTCTTGGTTGTGAAAGTCTTTTGATTTTTGGG
GTCTTTGGTTGGTTGGTTTGGTTTGGCTGTGTGCTCGTGTGTCCATCCTT
CTCCCCCTATTCCCACTCCTCTCCG
NAACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATATTTGTTCATTTGCTTTGAGACAAGAG
ACAAGGTCTCACCATGCACCTCTGGCTTGCTTGGAACTTGCTGTGTAGAA
CAGACTGGCCTGGAACACACAGAAATCTGCCTGTCTCCACCTCCCGAGTG
CTAGGATTAAAAGTATGCCTCACCACAAGCAGCAAAAAAGATTTTTTAGA
GACAACTGAAATGAAGTAAGAAAGGCATATTGGTGTGAACTGAGAATCCC
AGAACTTGGAGACACCAATATATGTTCAAGGCTAGCCAGAGCTACAGAGC
AAGTCCCTCTTTCAAAAATCTGCCACAAACAGGACCAGGGCGTGGCTCAG
CAAGTTGTGCCTGCTGTTAAGCCCGATGACCTGAGTTCAATTCTCAGGAT
CCATGTGTTGGAGAGAGAAGGGAACTGACTACCAAAAGGTGTCCTCTGAT
CAATATCAAACAAATTTTTTTTTTTATTGCATGCATAAGAGGCTTATTTA
AAATTGTTCCTGGAACACAAAAACGTGTAATCTTGGTACCCAACCTGAAA
GGACATGTGTGCGTTGGCGGCACTTAATCAAACAATTAAGGTATGACAGG
AATCCCTAAGCTCATTCTGTATCCCTTTCCTTAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_a18.g1 MSMg01no118_a18.g1 CHROMAT_FILE:
MSMg01no118_a18.g1 PHD_FILE: MSMg01no118_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:47 2005
         (290 letters)



>mm_chr1_74281568_74282258
          Length = 691

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatttgttcatttgctttgagacaagagacaaggtctcaccatgcacctctggcttgct 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 atatttgttcatttgctttgagacaagagacaaggtctcaccatgcagttctggcttgct 260

                                                                       
Query: 61  tggaacttgctgtgtagaacagactggcctggaacacacagaaatctgcctgtctccacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaacttgctgtgtagaacagactggcctggaacacacagaaatctgcctgtctccacc 320

                                                                       
Query: 121 tcccgagtgctaggattaaaagtatgcctcaccacaagcagcaaaaaagatttttt-aga 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tcccgagtgctaggattaaaagtatgcctcaccacaagcagcaaaaaagatttttttaga 380

                                                                       
Query: 180 gacaactgaaatgaagtaagaaaggcatattggtgtgaactgagaatcccagaacttgga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaactgaaatgaagtaagaaaggcatattggtgtgaactgagaatcccagaacttgga 440

                                                              
Query: 240 gacaccaatatatgttcaaggctagccagagctacagagcaagtccctctt 290
           |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacaccaatacatgttcaaggctagccagagctacagagcaagtccctctt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space:   191642
Effective search space used:   191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)