BAC Information

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BAC

Clone NameMSMg01-118H08
Chromosome1 (Build37)
Map Location 66,716,883 - 66,717,139
singlet/doubletsinglet
Overlap genenone
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik
Downstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118H08.T7 (MSMg01no118_h08.b1)MSMg01-118H08.TJ (MSMg01no118_h08.g1)
ACCAG329327AG329328
length720908
length of high quality
(start - end)
261 (48 - 308)---
definitionCHROMAT_FILE: MSMg01no118_h08.b1 PHD_FILE: MSMg01no118_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:19 2005CHROMAT_FILE: MSMg01no118_h08.g1 PHD_FILE: MSMg01no118_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAGATCCGCG
GAATTCATTTTGACTCCCGAGCATAAGACATTGATAAATCTTTGATCAGC
TGTTTACCAGTAGATGCAAATGTTCTAAAGGGACTATTTTTTTTTTAAAT
CGTGCTTAAAAACAGGCCTCTCAGGCTGCAGAGATGGCTCAGTGGGTAAG
AGCACTGAGTGCTCTTCCAGAGGTCCCGAGTTCAATTCCCAACAACCACA
TCGGGGCTCACAACCATTTGTAATGGAGTCCGATGCCCTCTTCTGGTGCG
TTTGAATACAGTTACAGTGCACTCATATATAACATAAATAAATAAATCTT
ATACAAAACAAAATACATCCCAGGCATCTTCATGCCACTGATATACGTGA
CCTTGATATATTGCTATGATATCCATCACCATGGCACAAAATGATATAAT
AACCCTCTCTTACGAGGCAGCCTGACAATAGTTCATCCCTGGCCTTCTGC
GATTTTCATAGTGGCCTACATGCTTTGAGCGCTGGCCACCGTCTGCTATT
TATGCCCCTTATGTTCTACTATTTGTGCCCTACCTGCTTTGATTCCGAGT
CCCCTTTCTAATAGTGGCCCCACGCTCTTTCATTTTTTTTGACCTTGATA
CCCTCCACTGACCGTGTTCCGCGTTCTTGTCCCCCCTCTCTTCCTACCAT
CCTCGTTTCCACATTTATCC
CGATTGCTNGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAGTCATCTTCTGCGGT
CCAATCAGTACTGAGCATCATATCTTTTCACTCTTGCCCTAACTTCTTTC
ACGCTTTTCCTCTCCTTCGGCCATTCTTATCGCATCGCACATACTATTTT
CTTGATTCATCTCTCACCCTGCCTGCTTCTCCTCTTTATTATCCCTCCCC
ATTCCCTCTCCTTCTCTAACTATGCCCTCTGATTTATTTTCGACTGCACT
TATCTTCTTCTCTGCATTATATTCGACGTTATACATCGCCGTGCCGTTCT
GCATCGCATCCTCGGTATATTGAGGTCACTGACATCTTATCGTGTATATA
TGCGGCCCACGCTACCCCTCCGCGTTATGATTACTCGTAGGTACATGCAC
ATCTTCCTTCTTACGTGCTCTATTTTATCCGCCTCATTAGCTCACTTACC
CTTTCCACTCCTTACCGACATTCTCATCTTTCCCTTGTCTCTTGACCATA
CTTTCTTCCACCATACATCATTGTCTTCGAGCAACTGACTTTAATATCAC
ATTATTGCACACCGTCCTCGTATTCAATCTAACCCCTTATATAAATCTCG
GCATATCTCCATTAATTGCTTCTTCTTTCCCATCACACACCGCCTACCTG
CAACCATGTGTGTTTTATATCATCCACCGACCCACTCGTATCACCTATTT
CCCTTTTCGCCCCCTTTCTCCCGCCCACTCCCTCACCTCATTTGAATCCC
ACCACTCATTTTGTATTGTTTATTGATATTTCCCACTATTTCTCTGTTTC
TTCTTAACACGACATTTCCTCTTAACTTTCGTACCCATCTACTCCTCCCC
AATAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_h08.b1 MSMg01no118_h08.b1 CHROMAT_FILE:
MSMg01no118_h08.b1 PHD_FILE: MSMg01no118_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:19 2005
         (261 letters)



>mm_chr1_66716813_66717474
          Length = 662

 Score =  458 bits (237), Expect = e-133
 Identities = 252/257 (98%), Gaps = 1/257 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcattttgactcccgagcataagacattgataaatctttgatcagctgtttaccag 63
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gaattcattttgacacatgagcataagacattgataaatctttgatcagctgtttaccag 268

                                                                       
Query: 64  tagatgcaaatgttctaaagggacta-ttttttttttaaatcgtgcttaaaaacaggcct 122
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 267 tagatgcaaatgttctaaagggactatttttttttttaaatcgtgcttaaaaacaggcct 208

                                                                       
Query: 123 ctcaggctgcagagatggctcagtgggtaagagcactgagtgctcttccagaggtcccga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ctcaggctgcagagatggctcagtgggtaagagcactgagtgctcttccagaggtcccga 148

                                                                       
Query: 183 gttcaattcccaacaaccacatcggggctcacaaccatttgtaatggagtccgatgccct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gttcaattcccaacaaccacatcggggctcacaaccatttgtaatggagtccgatgccct 88

                            
Query: 243 cttctggtgcgtttgaa 259
           ||||||||| |||||||
Sbjct: 87  cttctggtgtgtttgaa 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 662
Length adjustment: 9
Effective length of query: 252
Effective length of database: 653
Effective search space:   164556
Effective search space used:   164556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)