BAC Information

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BAC

Clone NameMSMg01-118H17
Chromosome1 (Build37)
Map Location 73,434,886 - 73,435,169
singlet/doubletsinglet
Overlap genenone
Upstream geneXrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
Downstream genePinc, LOC672208, LOC100043291, Tns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118H17.T7 (MSMg01no118_h17.b1)MSMg01-118H17.TJ (MSMg01no118_h17.g1)
ACCAG329343AG329344
length714712
length of high quality
(start - end)
---284 (70 - 353)
definitionCHROMAT_FILE: MSMg01no118_h17.b1 PHD_FILE: MSMg01no118_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:20 2005CHROMAT_FILE: MSMg01no118_h17.g1 PHD_FILE: MSMg01no118_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCCATCAAACTCATAATTGCGGCGCTAAAAGAGGCCTTTTCCAACCCG
CCGNGGAANCANGNCTTACCCCAGCCAGGAAGNANNGACCGAGNNCNCNC
NCNAGCCCNGANGANAAATTTTAACCACCGCAGCAAGGACCGGANGGNNG
AACCCCCCGAAACGCCGAAGGAGCCGCGAGAGCACCAGGACAGCACAGCA
GCGCAGCCCCGGAGCACAGAACACGCCGGCCGCAGAGCAACCCAAGGCAC
CGTTTTTTTTGCAATCGCTTGTGGATAGCATTTTCTACAGCTTTAGAACA
ACATGCATAACCCAAGTTTTTTTTTTTATCAAGGGACACAACAGGACACC
GCAAGANGTTTTTTTTTCCCCCCCCCCTTCAGACCCTTACTATATAGAAA
TCTATTAGCTACTACGCTACTACAAAATTAAACCACCTCCTTCGCTTCGA
CTGCCCATAGCAAGTCATGTACAAAGCTAGACTACTCTTCCCCACTTCTT
TCCCCCAGGACGCTGACCCTCATTCTCATCCTTTTCCATTTTGCCTCCCT
CTAGACAACCCGATCCATCCCTTTCCCCCACTCCCCCCTTTCCCCCCGCT
CTTCCTCTTTTTTTCTTTTTTCCTCCCCCCCCCCTTTTCCCCCTCCTTCC
TTTTTTTTTCTTCCCAACAAACGGTTGCCCTTTCCTTCTCCACTTGCCCG
CCCTCGGTCCCACC
ATTGTAGTGGTAGGCCTGGAGGCCGCTGTTCAAAAATGXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCACTCCCTTCACAATGTGACCCCTAATTG
GAGTTGGGACCTCCCCACACTCTGGCAACAAAAGCATTCATGATGGCTAT
CAGAAGACATCCAGGCTCCAGTGACCTTTACTTGGTGGCCCTTGGGCTTT
ATTAATTGCTAAATACTTTAACTATCATCCTGGCTGTTACGTCTGACACA
GCATTACATAGGTGGCATTTTTCTCTCTGGGACATTTTCTCTCCTGCTTT
CCCAAGGTCCCTGGGTTGCTTATTCTACCTGTTCATTGTATAATTACATG
GCCTGAAGAATCTGTTTCTTCATTCAAAATAATAGTTCACTCAGCTGAAG
CTAGAAATCAAGTGAATGAGCTAAGTCACAAAAAGTTGCTGCTTTTATAC
TTCCCATTTGCATATGTGCTTTAAAAAAATCAGGCATGGGTTTTATTTAA
AGCAAAGGATTATCAAAGTGTGGTCCACAGGCCAAATTTACCATATCTCT
GTTTATTCATAGATCTAAGCAAAGAATGCTTAATCTTTAAATGCTACAAG
AATGCCAACAAAGGGTAGGCGGTAGATTCTACATGTAAAGAATAACGTAT
TTATCATACAGTCCTTTTATTGAAAAACACTTCTGGACCCTGACTTGTAT
TTAACACTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_h17.g1 MSMg01no118_h17.g1 CHROMAT_FILE:
MSMg01no118_h17.g1 PHD_FILE: MSMg01no118_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:21 2005
         (284 letters)



>mm_chr1_73434686_73435369
          Length = 684

 Score =  497 bits (257), Expect = e-145
 Identities = 278/285 (97%), Gaps = 2/285 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccactcccttcacaatgtgacccctaattggagttgggacctccccacactctggcaac 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccactgccttcacaatgtgacccctaattggagttgggacctccccacactctggcaac 260

                                                                       
Query: 61  aaaagcattcatgatggctatca-gaagacatccaggctccagtgacctttacttggtgg 119
           |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagcattcatgatggcta-caagaagacatccaggctccagtgacctttacttggtgg 319

                                                                       
Query: 120 cccttgggctttattaattgctaaatactttaactatcatcctggctgttacgtctgaca 179
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cacttgggctttattaattgctaaatactttaactatcatcctggctgttacgtctgaca 379

                                                                       
Query: 180 cagcattacataggtggcatttttctctctgggacattttctctcctgctttcccaaggt 239
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagcattacatcggtggcatttttctctctgggacattttctctcctgctttcccaaggt 439

                                                        
Query: 240 ccctgggttgcttattctacctgttcattgtataattacatggcc 284
           |||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 440 ccctgggttgcttattctacctgtccattgtataatcacatggcc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)