BAC Information

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BAC

Clone NameMSMg01-120B10
Chromosome1 (Build37)
Map Location 187,537,436 - 187,537,727
singlet/doubletsinglet
Overlap genenone
Upstream geneHlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1, Iars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik
Downstream geneLOC677785, Lyplal1, Tgfb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120B10.T7 (MSMg01no120_b10.b1)MSMg01-120B10.TJ (MSMg01no120_b10.g1)
ACCAG330543AG330544
length722700
length of high quality
(start - end)
287 (78 - 364)438 (56 - 493)
definitionCHROMAT_FILE: MSMg01no120_b10.b1 PHD_FILE: MSMg01no120_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:25 2005CHROMAT_FILE: MSMg01no120_b10.g1 PHD_FILE: MSMg01no120_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAAGAGGATCCGCG
GAATTCTATTATTTCCATAACAAAAGACAGCGGCTAGACCTGTCGTCCCA
AGTACTCTGAAGGTTGAGGCAGGAAGCCTACACATTTAAGGCCTGTCTGT
AGAATTTAGTGAAACCTTACAATTCAAAAAGTAAAGAAAGGACATAGGTC
AACAGTGGGGTTGAGATCGAGACCCTGAAGCCACAGCCACAGATACTTTT
TTGAAGACAATGTTTCCATTGTCATCTACTGATAAAGGAAAAAAAACATT
TTCAAGTTTCCACTGTCCCTTATATTCCAAAGCCCAACTGTTTGAATTCT
GATTTCTGGCTTGAAGCCTATTGGCATCCTTTTTTTTTTTTTTTTTTTTT
GGAAATTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTAAAACCC
ACTTTGTAGAACATTTTGGTCTCTAACTCCCAAATTTGCCTGCCTCCCAA
GTGCTGAAATTTAAGGTTGTGTGCCTCCAATTCCGGCCTGACCTCCATTT
TAACTTATTAACCGCACAAAATCTGCAACTGCACCCTGCACCGTTAACAG
CCTCTGTGCATGTGTGTGCACATATTTAACGCCAGCATTTCTCCCCACCT
TCCCACTTCCCCGGCCCGACCTTTATGCGTCTTCCACTTTTTGGTCCTTC
CACCAGCTTTTTAAGGCCTCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATAGACTGC
CATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTG
CCTACACTAGCAAGATTTTATTGAAAGGACCCAGATGTAGCTGTCTCTTG
TGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAG
CTAATGGATGGATCACAGGGCTCCCAATGCAGGAGCTAGAGAAAGTACCC
AAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGATCAACATTATGAACT
AACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATG
GCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTT
ATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGCGG
GTAGGGGGACTCTTGGCATAGCATTGGAAATGTAAATGAGCTAAATACCT
AAGTAAAAATGGAATAAAATGACCTTAGGAAACTCACCAGTATGAACAAT
GAATTTGCATCAGTTAAAAAAACAAGAATACTAATAAGGAAAGATTGGTC
CAACTTTGTGGGGCTACGGAAACTTCTCAGCTTCATTATAATCCTAAAGG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_b10.b1 MSMg01no120_b10.b1 CHROMAT_FILE:
MSMg01no120_b10.b1 PHD_FILE: MSMg01no120_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:25 2005
         (287 letters)



>mm_chr1_187537236_187537928
          Length = 693

 Score =  499 bits (258), Expect = e-146
 Identities = 281/292 (96%), Gaps = 6/292 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcggctagacctgtcgtcccaagtactctgaaggttgaggcaggaagcctacacattt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 cagcggctagacctgtcgtcccaagtactctgaaggttgaggcaggaagcctgcacattt 260

                                                                       
Query: 61  aaggcctgtctgtagaatttagtgaaaccttacaattcaaaaagtaaagaaaggacatag 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 aaggcctgtctgtagaatttagtgaaaccttagaattcaaaaagtaaagaaaggacatag 320

                                                                       
Query: 121 gtcaacagtggggttgagatcgagaccctgaagccacagccacagatacttttttgaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcaacagtggggttgagatcgagaccctgaagccacagccacagatacttttttgaaga 380

                                                                       
Query: 181 caatgtttccattgtcatctactgataaaggaaaaaaaa------cattttcaagtttcc 234
           ||||||||||||||||||||||||| |||||||||||||      |||||||||||||||
Sbjct: 381 caatgtttccattgtcatctactgagaaaggaaaaaaaaacaaaacattttcaagtttcc 440

                                                               
Query: 235 actgtcccttatattccaaagcccaactgtttgaattctgatttctggcttg 286
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgtcccttacactccaaagcccaactgtttgaattctgatttctggcttg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 693
Length adjustment: 9
Effective length of query: 278
Effective length of database: 684
Effective search space:   190152
Effective search space used:   190152
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)