BAC Information

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BAC

Clone NameMSMg01-120I17
Chromosome1 (Build37)
Map Location 112,272,164 - 112,272,668
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508, Cdh7
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120I17.T7 (MSMg01no120_i17.b1)MSMg01-120I17.TJ (MSMg01no120_i17.g1)
ACCAG330887AG330888
length709714
length of high quality
(start - end)
292 (74 - 365)517 (70 - 586)
definitionCHROMAT_FILE: MSMg01no120_i17.b1 PHD_FILE: MSMg01no120_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:01 2005CHROMAT_FILE: MSMg01no120_i17.g1 PHD_FILE: MSMg01no120_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGATCCGCGGAAT
TCTTTTGTTTCTAATTTGAGAAGATTAGTATTAGGTTTTTTCTGATGGTC
TGATAGAACTCTACACTTGTTCTTGGGCTCTTTTTGGTTGGGAGACTATT
AATGATTATTTCTATTTTTATGGGAGTTAAGGGACTTTATAGATAATCTT
GACTCTGACTTAACTTTGCTGCCTGGTATGTATCTAGAGAATTGTCCCCT
TCATCCCAATTTTCTAGTTTTGTTGAGTATAAACTTTTGTAGAATGATCT
GATGATTTTTTTTTGTATTTCCTTAGATTCTGTTGTTATGTTTTCCTTTT
CATTTCTGATTTTGTCCACCACGATAATGTCTCTGTGCCCTCTAGTTAGT
CTGGGTAAGGGCTTTTCTCTGTTGTTGATTTTCTCAAAGAACCAGCTCCT
GGTTTGGTTGATTCTTGGTATAGATCTTTTTGTTTCCACTTGTTTGACTT
CAGCCCTGAGTTTGACTATTTCCTGCTGTTTACTTCTCTTGGGTGAATTT
GCTTCTTTTTGTTCTAGAAAGCTCAGATGTGATGTCAAGCTGACAGCATA
TGCTCTCTCTACTTTCTTTTTGGAGTCACTCAAAGCTATGTGTTTTCCTC
TTAGGACTGATTTCTTTGTGTCCTATAACTTTGTGTACGATGAGGTTTCC
TTTTCAATA
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTTGTCTTACCATTGTTCCCATCATCCTGA
AGCTGCTTGTCTTATAGAAAGATGGAATGGCCTTTTGAAGACGCAGTCAC
AGTGCCAATTAGGTGGTAATAGCATGAAAGGCTGAGGCAGAGTTCTTCAG
AAGGCAGTATATGCTTTAAATCAGCGTTCGATGTATGGTACCATTTCCCC
CATAGCCAGGATCCATGGGTCTGGAACCTGGGGTTCTTGCAGTAATTTTT
TTGTTTGTTTTTTGTTTTTGATGACTATAAATTTCAAGACACTTGTTTAA
ATTTTATTTCATTAATGAATGTATCTCCAAATTTCTGATTAATGGCCATT
AGTACCCCAACTGTTCTTATTGGTAAATCCAACCCAAAACTCATGTAGTA
TCATTACACTTTTCTACTGACCTATGCTTTGGGCTCTTGAGCTATTACGT
CTTCAGAGAAGGATCAGATTACAGTTGTTTCTTTACTGCATCAGAAGTAC
TCTTGGCCAGTTTCTGATCTCTATAAATATTTAAAGTAAAAATATCAATT
TAGGAATATGCATTTGAATTAACTTTAATCTTTAAACAATTTCTAAGTGT
CAGAAGATTGTTCCCAAATATATAACCCATGACTTTACATCATTACTTAT
TGAAACTTTTACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_i17.g1 MSMg01no120_i17.g1 CHROMAT_FILE:
MSMg01no120_i17.g1 PHD_FILE: MSMg01no120_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:01 2005
         (517 letters)



>mm_chr1_112271748_112272668
          Length = 921

 Score =  760 bits (393), Expect = 0.0
 Identities = 476/505 (94%), Gaps = 5/505 (0%)
 Strand = Plus / Minus

                                                                       
Query: 18  tccc-atcatcctgaagctgcttgtcttatagaaagatggaatggccttttgaagacgca 76
           |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 921 tcccaatcatcctgaagctgcttgtctgatagaaagatggaatggccttttgaagatgca 862

                                                                       
Query: 77  gtcacagtgccaattaggtggtaatagcatgaaaggctgaggcagagttcttcagaaggc 136
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gtcacagcgccaattaggtggtaatagcatgaaaggctgaggcagagttcttcagaaggc 802

                                                                       
Query: 137 agtatatgctttaaatcagcgttcgatgtatggtaccatttcccccatagccaggatcca 196
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 801 agtatatgctttaaatcagcgttcgatgtatggtaccgtttcccccatagccaggatcca 742

                                                                       
Query: 197 tgggtctggaacctggggttcttgcagtaatttttttgtttgt---tt-tttgtttttga 252
           |||||||||||||||| || |||||||||||||||||||||||   || |||| ||| ||
Sbjct: 741 tgggtctggaacctggagtccttgcagtaatttttttgtttgtgtgttctttggtttcga 682

                                                                       
Query: 253 tgactataaatttcaagacacttgtttaaattttatttcattaatgaatgtatctccaaa 312
           |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 681 tgactataaatttcaagacacttgtttaaattttatttcattgatgaatggatctccaaa 622

                                                                       
Query: 313 tttctgattaatggccattagtaccccaactgttcttattggtaaatccaacccaaaact 372
           ||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| |
Sbjct: 621 tttctgattaatgaccattactactccaactgttcttattggtaaatccaacccaaaaat 562

                                                                       
Query: 373 catgtagtatcattacacttttctactgacctatgctttgggctcttgagctattacgtc 432
           |||| ||| ||||||||||||||||||||||| ||||||||| | |||||||||||| ||
Sbjct: 561 catgcagtgtcattacacttttctactgacctgtgctttggggttttgagctattacatc 502

                                                                       
Query: 433 ttcagagaaggatcagattacagttgtttctttactgcatcagaagtactcttggccagt 492
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||
Sbjct: 501 ttcagagaaggatcagattacagttgtttctttactgcattagaagtactcttaaccagt 442

                                    
Query: 493 ttctgatctctataaatatttaaag 517
           || ||||||||||||||||||||||
Sbjct: 441 ttttgatctctataaatatttaaag 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 921
Length adjustment: 10
Effective length of query: 507
Effective length of database: 911
Effective search space:   461877
Effective search space used:   461877
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)