BAC Information

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BAC

Clone NameMSMg01-121P09
Chromosome1 (Build37)
Map Location 163,477,417 - 163,477,527
singlet/doubletsinglet
Overlap genenone
Upstream geneRabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18
Downstream geneEG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121P09.T7 (MSMg01no121_p09.b1)MSMg01-121P09.TJ (MSMg01no121_p09.g1)
ACCAG331943AG331944
length701702
length of high quality
(start - end)
115 (195 - 309)290 (67 - 356)
definitionCHROMAT_FILE: MSMg01no121_p09.b1 PHD_FILE: MSMg01no121_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:55 2005CHROMAT_FILE: MSMg01no121_p09.g1 PHD_FILE: MSMg01no121_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGCGCGCTAAACGACTACTATTTCGACACGACCCGCGGAATCATA
ACCTTTACCCATCATTCCGTTATATGTAGTTACCTCCTATGGATCGTCTA
AAAGTTGCTTTCCCAACATAGCTAACAGAGAAAAAGGAAAATGTGATCTG
GAGATAGAATGAGAGAAAACAAGAGAAGAGAATTTCACTCAAACCTTCTA
CTACAAAACTGAGATTTTTGATCAGTCTCTAGATACTCAAGTTATATACA
TGGGACATACTTGAGCCATAAGAAGCTGAATTTCCAATACTGTGACTACT
AATTACAATCATGTGAATCAAAATGTGTTATATACTTTGGACTTTACTCT
CTGCATGATGAAGGCGCCTCCCCCGAGCCTGAAGTAACAAAATAGTGCAC
GCTCTAAAGTCTATGGAATCAACGTAAAGAATGGCTAGATATTCCGACGA
AGCAACTGTTAGTCATGACGCTCACATAAAACTCTAGATAAGAGCGTATG
AAGACCTATATAAAGGAGTGGTAAATGAGCATTCAAAAAAGATCTACTAA
GCTTCTGGCTACAGGGTGCTATAAAGAAGAGAAAGCCCCTGGCAGGGCTT
TGCCACAGCATTCCGGGGGGAGCCATCTTGGTCCCCGAATTCATTAAGAA
TAGTCTGTGCAGGACCTAGTGCGGACCCACCAACCTAACCGGTCCTGGCA
C
TGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACC
TGGAAAAATGTTCACACTCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGATGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAATATTGGACATAGTACTACCGGAGGATCCAGCAATAC
CTCTTTTGTTCATATACCCACACCATGCCCACACTGGTAAGAAGGACACA
TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCTAGAAGCTGGAA
AGAACCTAGATGCCCCTCAACAGAGGAATGGACACCGAAAATGTGTTACA
TCTACACGATGGGAGTACTACCCCTGCTATTAAAAAGACTGAATTTATGA
AATTCCTAGCCAAATGTATGGACCTGGAGGGCCACATCCTGACGGAGCGA
AATCTTTTCTACGAACCCCCACACTATGTTCCCCCTGATAAGCGGATATT
ATTCTCCAACCTAGGATACCCAACATATAAGAATTGCTCCGCAAAACCCA
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_p09.b1 MSMg01no121_p09.b1 CHROMAT_FILE:
MSMg01no121_p09.b1 PHD_FILE: MSMg01no121_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:55 2005
         (115 letters)



>mm_chr1_163477217_163477731
          Length = 515

 Score =  207 bits (107), Expect = 2e-58
 Identities = 110/111 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctactacaaaactgagatttttgatcagtctctagatactcaagttatatacatggg 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cttctactagaaaactgagatttttgatcagtctctagatactcaagttatatacatggg 252

                                                              
Query: 61  acatacttgagccataagaagctgaatttccaatactgtgactactaatta 111
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acatacttgagccataagaagctgaatttccaatactgtgactactaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 515
Length adjustment: 8
Effective length of query: 107
Effective length of database: 507
Effective search space:    54249
Effective search space used:    54249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)