BAC Information

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BAC

Clone NameMSMg01-121P19
Chromosome1 (Build37)
Map Location 103,177,090 - 103,177,420
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121P19.T7 (MSMg01no121_p19.b1)MSMg01-121P19.TJ (MSMg01no121_p19.g1)
ACCAG331963AG331964
length686685
length of high quality
(start - end)
645 (42 - 686)286 (69 - 354)
definitionCHROMAT_FILE: MSMg01no121_p19.b1 PHD_FILE: MSMg01no121_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:57 2005CHROMAT_FILE: MSMg01no121_p19.g1 PHD_FILE: MSMg01no121_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTATGGATCACTTTGAATGTGGCTGTCCATACAGCAATGTGCTCAATTAT
AAAAACATATTGAGTATTAGAAACTTTTGCTAAGAACATGTAAAATATTT
CCTTAATAGTTCCTTCAAATTACTATGATGTGACATATTAAATGAAATAT
GTTGTGTTGTTAATGTGCATACATATATGTTCTTGTGTAAATGAATGTGG
AAACATGTAAAAGTGTGTGTTTGTGTGTGTGTATGTTTGTGTGTGTGTGC
ACATGGAGGCAGCGATAACTCTATGATAAGTGACTTCCTTTATCATCTCC
ACATTAATATTTGAAACACCATCGCCCTGGTAACATGGAGCACACCAATT
CAGCAAGTATGAACAAGGGATTTCTCTGTCTCTGTATCTTCTGCATTGAG
ATTACAGGAATAAATGGATATATCTTGCTTGTTGAATGGTCACTAGGGAT
CAATACTCAACACTTTCATTCATATTCAGAAAGCAACCTACACAGTGAGA
CATCTGTTGAGACCTCTCATTAATTATTTTTACTGTGGCTGCTAGAATAT
TTAAAAGGACATATCTATCTCTCATTTGAGCTCTTCCAACCCAATATTTT
TTTCTTTCTTTTGTAGTCTCTTTATGGCATCTCATT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXGGGGTTAAGAGCTAAACAAGAATTCTCACCTG
AGGAATACCGAATGGCGGAGATGCACCTGAAAAGATGTTCAGCATCCTTA
ACCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCATACC
AGTCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCAGATGCTGGCGAT
GATGTGGAGAGAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTT
GTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACAT
AGTACTATCAGAGGACACTGCCACACCTCTGCTAGGCATTTATCCAGAAG
ATGTTCCAACCAGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGTC
TTATTTATAAGAGCCAGGAGCTGGAAAGAACCCAGACATCCCTCAACAGA
GGAATGGATACAGAAAATGTGGTACATTTACACAATGGAATACTACTCAG
CTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTG
GAGGGCATCATCCTGAGTGAGATAACCCAATCCCAAAGGAACTTACACAA
TATGTACTCACTGATAAGTGGATATTAGCCCAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_p19.b1 MSMg01no121_p19.b1 CHROMAT_FILE:
MSMg01no121_p19.b1 PHD_FILE: MSMg01no121_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:57 2005
         (645 letters)



>mm_chr1_103176376_103177420
          Length = 1045

 Score =  596 bits (308), Expect = e-174
 Identities = 326/332 (98%), Gaps = 1/332 (0%)
 Strand = Plus / Minus

                                                                        
Query: 314  taatatttgaaacaccatcgccctggtaacatggagcacaccaattcagcaagtatgaac 373
            ||||||||||||||  || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 taatatttgaaacagtat-gtcctggtaacatggagcacaccaattcagcaagtatgaac 987

                                                                        
Query: 374  aagggatttctctgtctctgtatcttctgcattgagattacaggaataaatggatatatc 433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986  aagggatttctctgtctctgtatcttctgcattgagattacaggaataaatggatatatc 927

                                                                        
Query: 434  ttgcttgttgaatggtcactagggatcaatactcaacactttcattcatattcagaaagc 493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926  ttgcttgttgaatggtcactagggatcaatactcaacactttcattcatattcagaaagc 867

                                                                        
Query: 494  aacctacacagtgagacatctgttgagacctctcattaattatttttactgtggctgcta 553
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 866  aacttacacagtgagacatctgttgagacctctcattaattatttttactgtgactgcta 807

                                                                        
Query: 554  gaatatttaaaaggacatatctatctctcatttgagctcttccaacccaatatttttttc 613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806  gaatatttaaaaggacatatctatctctcatttgagctcttccaacccaatatttttttc 747

                                            
Query: 614  tttcttttgtagtctctttatggcatctcatt 645
            ||||||||||||||||||||||||||||||||
Sbjct: 746  tttcttttgtagtctctttatggcatctcatt 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)