Query= MSMg01no122_b05.b1 MSMg01no122_b05.b1 CHROMAT_FILE:
MSMg01no122_b05.b1 PHD_FILE: MSMg01no122_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:08 2005
(737 letters)
>mm_chr1_154106890_154108025
Length = 1136
Score = 1056 bits (546), Expect = 0.0
Identities = 564/572 (98%), Gaps = 5/572 (0%)
Strand = Plus / Minus
Query: 166 gtgagttcaaggccaaccttgtgaaacaaacgaacaagcaaacaaacaaatgaacaaatg 225
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 1136 gtgagttcaaggccaaccttgtgaaacaaacgaccaag----caaacaaatgaacaaatg 1081
Query: 226 aacagaaaccagagcggtagctcagcaggtaaaggcacttgccaccaaacctgacttgag 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 aacagaaaccagagcggtagctcagcaggtaaaggcacttgccaccaaacctgacttgag 1021
Query: 286 ttccatctctgggaaccacatgatagatcagcagaaccaagtccttcaagttgccctctg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 ttccatctctgggaaccacatgatagatcagcagaaccaagtccttcaagttgccctctg 961
Query: 346 gccactgtatgcacaccgtcacacttgtcaggggtggggaaatgggctcagcatgggtac 405
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 960 gccactgtatgcacaccgtcgcacttgtcagaggtggggaaatgggctcagcatgggtac 901
Query: 406 acaaaacaaacaagcacaccagtaacaaaaaaatcagtcaaattaacccaaaccagctct 465
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 900 acaaaacaaacaagcacaccagtaac-aaaaaatcagtcaaattaacccaaaccagctct 842
Query: 466 tcctcactctcctgagctgacttctttttattcttcatgatctttccctctgccctttcc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tcctcactctcctgagctgacttctttttattcttcatgatctttccctctgccctttcc 782
Query: 526 agattgctcaccctcttctctcttttctgtgtgtattccccacacatatttgttttgggg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agattgctcaccctcttctctcttttctgtgtgtattccccacacatatttgttttgggg 722
Query: 586 gaatccatggccctgcattctctctccatgaataatcacttacattgtatcctgtcatct 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gaatccatggccctgcattctctctccatgaataatcacttacattgtatcctgtcatct 662
Query: 646 ctgcctcctcgcctctctgcgttctctcccagcacgtcccatagcaaaagctatctgcac 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctgcctcctcgcctctctgcgttctctcccagcacgtcccatagcaaaagctatctgcac 602
Query: 706 ggaaaagaccaccaactcagtaggtcctgtgc 737
||||||||||||||||||||||||||||||||
Sbjct: 601 ggaaaagaccaccaactcagtaggtcctgtgc 570
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 737
Length of database: 1136
Length adjustment: 10
Effective length of query: 727
Effective length of database: 1126
Effective search space: 818602
Effective search space used: 818602
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_b05.g1 MSMg01no122_b05.g1 CHROMAT_FILE:
MSMg01no122_b05.g1 PHD_FILE: MSMg01no122_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:08 2005
(694 letters)
>mm_chr1_154010147_154011238
Length = 1092
Score = 1154 bits (597), Expect = 0.0
Identities = 667/707 (94%), Gaps = 30/707 (4%)
Strand = Plus / Plus
Query: 5 tatctgcttgtccacaggagacattcatcacttctcgctctcttttattccagaaattta 64
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 189 tatctgcttgtccacaggagacattcatcacttctcgctcccttttattccagaaattta 248
Query: 65 ctttgagtcttaaatttattgtaagaatgaatttttaatgcattttgtgacttacatgag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 249 ctttgagtcttaaatttattgtaagaatgaatttttaatgcattttgtgacttacataag 308
Query: 125 atctagcccttgttgactgtcctaattactccaagaagctctcagaatgcagccaacttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atctagcccttgttgactgtcctaattactccaagaagctctcagaatgcagccaacttt 368
Query: 185 cctgaagtgaacttgcatcaggacagtatt----------------gcctattttacctg 228
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 369 cctgaagtgaacttgcatcaggacagtatttgcttctgcgtgtattgcctattttacctg 428
Query: 229 catggagtctggtaactctggtctatgttgttaaccctggatgcttttaggtgcctgctt 288
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 429 catggagtctggtaactctggtctacgttgttaaccctggatgcttttaggtgactgctt 488
Query: 289 ttatattatactcagcgtttcaataagataagtaatctagataactttgcttgttactcc 348
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 489 ttatattatactcagcttttcaataagataagtaatctagataactttgcgtgttactcc 548
Query: 349 ctaaaatgagacgtctaggacagcaaataatcttcaccatgtccacacagtctcaccaag 408
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 549 ctaaaatgggacgtctaggacagcaaataa-cttcaccatgtccacacagtctcaccaag 607
Query: 409 ctgagtgttcaagtagtaatgtatattttgcttcctgaaattgctctacattgtcatttt 468
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ctgagcgttcaagtagtaatgtatattttgcttcctgaaattgctctacattgtcatttt 667
Query: 469 gattattgtttaaaaaaaaatcaggggaaagaaacccagatgtcctgtcctagctaccat 528
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 gattattgtttaaaaaaa--tcaggggaaagaaacccagatttcctgtcctagctaccat 725
Query: 529 catccatgagtgttaaacattactcagacagagaaaatatattgtaactttatatttaaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 catccatgagtgttaaacattactcagacagagaaaatatattgtaactttatatttaaa 785
Query: 589 agttgttgacacataatgaataaaatctcaagtgttgtctaatttatacatgaagtttta 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 agttgttgacacataatgaataaaatctcaagtgttgtctaatttatacatgaagtttta 845
Query: 649 ttgaaacactatt----ttttaaaaaaaaaactgacactcatttttt 691
|||||||| |||| ||||||| ||||||||||||||||
Sbjct: 846 ttgaaacattattatttttttaaa-------ctgacactcatttttt 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1092
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1082
Effective search space: 740088
Effective search space used: 740088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
