Query= MSMg01no122_f17.b1 MSMg01no122_f17.b1 CHROMAT_FILE:
MSMg01no122_f17.b1 PHD_FILE: MSMg01no122_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:43 2005
(573 letters)
>mm_chr1_91963583_91964555
Length = 973
Score = 884 bits (457), Expect = 0.0
Identities = 472/479 (98%), Gaps = 5/479 (1%)
Strand = Plus / Minus
Query: 1 tggcctgaggtatagactgtgcagatgagagtagacagcagcaactgtgataatccaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tggcctgaggtatagactgtgcagatgagagtagacagcagcaactgtgataatccaagc 417
Query: 61 tgctctattgccaagtgccaggtgacctttgatcctgacagtctggggccagctcagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgctctattgccaagtgccaggtgacctttgatcctgacagtctggggccagctcagaag 357
Query: 121 gctttgccccctggccttggcctttccctctgtctcatacgcttcaatacatatacatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gctttgccccctggccttggcctttccctctgtctcatacgcttcaatacatatacatag 297
Query: 181 taggaaagaagggtccaaaggaaatgaacatgcctcagccaacctcattgtctgtctctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 taggaaagaagggtccaaaggaaatgaacatgcctcagccaacctcattgtctgtctctc 237
Query: 241 tgcaatctgttccaccacctccaaataaacaaatacttttttaataat--tttttttaaa 298
|||||||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct: 236 tgcaatctgttccaccacctccaaataaacaaatac---ataaataataatttttttaaa 180
Query: 299 aaaacaacttggttaagctattataggaatgatctttaaaattattagtttggaagaaat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aaaacaacttggttaagctattataggaatgatctttaaaattattagtttggaagaaat 120
Query: 359 gcaggacaccaggggaggaaaagcaggcctagaggaccccagaggccccagagcccattg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 gcaggacaccaggggaggaaaagcaggcctagaggaccccagaggccccagagcccattg 60
Query: 419 agccttaggcttgacttgacttccatgtattcaccatggccacagaccccttcacacaa 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 agccttaggcttgacttgacttccatgtattcaccatggccacagaccccttcacacaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_f17.g1 MSMg01no122_f17.g1 CHROMAT_FILE:
MSMg01no122_f17.g1 PHD_FILE: MSMg01no122_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:43 2005
(257 letters)
>mm_chr1_91858681_91859337
Length = 657
Score = 474 bits (245), Expect = e-138
Identities = 254/257 (98%)
Strand = Plus / Plus
Query: 1 ctccccagcccctcagcaccgtgtgcccctcgtgtttgccaggcagctggctgccttcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccccagcccctcagcaccgtgtgcccctcgtgtttgccaggcagctggctgccttcat 260
Query: 61 tatccttacgccaacacagtttaaaaatctccgctgcctccttgctgtctgcggagaggc 120
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttttacgccaacacagtttaaaaatctccgctgcctccttgctgtctgcggagaggc 320
Query: 121 ggctgccacattactctgacacgttgatgtcattagtgtccaagcgcacgctcttcagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctgccacattactctgacacgttgatgtcattagtgtccaagcgcacgctcttcagct 380
Query: 181 aatgaggcggcagaaagaaaattaatgggaaaaatcacacaggcacattgctttatatgt 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgaggcggcagaaagaaaattaaggggaaaaatcacacaggcacattgctttatatgt 440
Query: 241 agatggagaaataaaag 257
|||||||||||||||||
Sbjct: 441 agatggagaaataaaag 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space: 160704
Effective search space used: 160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
