Query= MSMg01no122_i14.b1 MSMg01no122_i14.b1 CHROMAT_FILE:
MSMg01no122_i14.b1 PHD_FILE: MSMg01no122_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:05 2005
(769 letters)
>mm_chr1_38598920_38600079
Length = 1160
Score = 1276 bits (660), Expect = 0.0
Identities = 733/766 (95%), Gaps = 21/766 (2%)
Strand = Plus / Plus
Query: 10 tccgcggaattc-ctcatgccatctccctttaa-----ggcagggactaggtaagagttg 63
|||| ||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct: 210 tccg-ggaattcactcatgccatctcc----aaaccatggcagggactaggtaagagttg 264
Query: 64 agacgagagtcctatctcctgacctttagggatattagtctggtaaccatgtatttaaag 123
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agacgagagtcatatctcctgacctttagggatattagtctggtaaccatgtatttaaag 324
Query: 124 aggatatctttcaaacaacagaaaaacagcttagtccaaagccaactcctcagttctata 183
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 aggatatctttcaaac-acagaaagacagcttagtccaaagccaactcctcagttctata 383
Query: 184 tgtgagggaaatactcagggctacggccaatccttcctattgctgagaagatctcagaac 243
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 384 tgtgagggaaatactcggggctacggccaatccttcctactgctgagaagatctcagaac 443
Query: 244 aagagagaaaggaggaaggagctcactcataagcagcgtgggtaccaggtatgtagacaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagagagaaaggaggaaggagctcactcataagcagcgtgggtaccaggtatgtagacaa 503
Query: 304 gctctgagctgggccccgtaggagggtcgggtagaagagaaaccactgagtggtccataa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctctgagctgggccccgtaggagggtcgggtagaagagaaaccactgagtggtccataa 563
Query: 364 cacagatcactgctggggggcggggggcgggggctttccagagcttggggcggcgacctt 423
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 564 cacagatcactgct-gggggcg------gggggctttccagagcttggggcggcgacctt 616
Query: 424 cgcccttggcaggcaacatgacttccttggctagaactctgttttttcagaatcccacgg 483
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 617 cacccttggcaggcaacatgacttccttggctagaactctg--ttttcagaatcccacag 674
Query: 484 cctaggtttacccactgcctgtcctgactgctctcctcagagcaggtttctccagcctct 543
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 675 cctaggtttacccactgcctgtcctgactgctctcctcagagcaggtttctctagcctct 734
Query: 544 cccaagagcagaggatgtaggaaccccagggaacgctctccccttcttccattctccacc 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 735 cccaagagcagaggatgtaggaaccccagggaacgctctccccttcttccattctccatc 794
Query: 604 aaagatagctgagcagcctaccacggaggccatttttcagacactttgagctctgggcca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aaagatagctgagcagcctaccacggaggccatttttcagacactttgagctctgggcca 854
Query: 664 gcacactgatggatataaacacccagaaggtgaacagggagaggaaaccaactggtggca 723
|||||||||||| ||| ||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 855 gcacactgatgggtatgaacacccagaaggtgaacagggagagggaagcaactggtggca 914
Query: 724 agaaggagactgcggtgcctcaaaaactccgctgctctcagccggc 769
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 agaaggagactgcggtgcctcaaaaactccgctgctctcagccggc 960
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 769
Length of database: 1160
Length adjustment: 10
Effective length of query: 759
Effective length of database: 1150
Effective search space: 872850
Effective search space used: 872850
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_i14.g1 MSMg01no122_i14.g1 CHROMAT_FILE:
MSMg01no122_i14.g1 PHD_FILE: MSMg01no122_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:06 2005
(761 letters)
>mm_chr1_38701372_38702532
Length = 1161
Score = 1361 bits (704), Expect = 0.0
Identities = 749/768 (97%), Gaps = 7/768 (0%)
Strand = Plus / Minus
Query: 1 cccagaacagtcattg-------ggcatgcatttagtgcccagacatatatgtaagcaaa 53
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 984 cccagaacagtcattgggtacctggcatgcatttagtgaacagacatatatgtaagcaaa 925
Query: 54 atacctatacgcatgaaaatgaataaattaactaataagggagaggtcctcatgtgattt 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 atacctatacgcatgaaaatgaataaattaactaataagggagaggtcctcatgtgattt 865
Query: 114 tcatgtgcccttagtaggtctatggattgacaggagctttcctttagaattgtgtgggat 173
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 864 tcatgtgcccttagtaggtctatgaattgacaggacctttcctttagaattgtgtgggat 805
Query: 174 gataggagaggcatgcttgctaggaaactgttttaagttggggtcatgatgaccaacaat 233
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gacaggagaggcatgcttgctaggaaactgttttaagttggggtcatgatgaccaacaat 745
Query: 234 catcttgtattctgtgtgttttattctgtggctttagtaggaaaatgggctcagtagtta 293
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 744 catcttgtattctgtgtgttttatcctgtggctttagtaggaaaatgggctcagtagtta 685
Query: 294 gatagctagcaattgataatgcatgcttcaacaacaaacacacatcctcagtcctacaga 353
||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||
Sbjct: 684 gatagctagcaattgataatgcaggcgtcaacaacaaacacacatcctcagtcctgcaga 625
Query: 354 agccataagtcccaggtaaaggaggaataatggcttatgagctagctttatctcttaccc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agccataagtcccaggtaaaggaggaataatggcttatgagctagctttatctcttaccc 565
Query: 414 tgaactctgtgcctttccatctgtataaacaactactgtcttgtggtcccctcttgggga 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaactctgtgcctttccatctgtataaacaactactgtcttgtggtcccctcttgggga 505
Query: 474 attactgtccttcctgggaagatgcaataactaaatttcactcaaagtcagaggcatctt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attactgtccttcctgggaagatgcaataactaaatttcactcaaagtcagaggcatctt 445
Query: 534 gaaagaattcagtgctgtagagggagagtttctggtcctgggattagtccggtcattggt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaaagaattcagtgctgtagagggagagtttctggtcctgggattagtccggtcattggt 385
Query: 594 agatattttagaattacttctggtaaatgtgaagacagccaggctcttcttaattctgag 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agatattttagaattacttctggtaaatgtgaagacagccaggctcttcttaattctgag 325
Query: 654 gtttctccttacacgggccatgaaagctcgtttactctagatagattcacctttgaagaa 713
||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||
Sbjct: 324 gtttctccttacacgggccgtgaaagctcgtttactctagatggatccacctttgaagaa 265
Query: 714 ccacggataacagatgatgattttattacaaaattgcccctatttttt 761
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccacggataacagatgatgattttattacaaaattgcccctatttttt 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 761
Length of database: 1161
Length adjustment: 10
Effective length of query: 751
Effective length of database: 1151
Effective search space: 864401
Effective search space used: 864401
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
