Query= MSMg01no122_l10.b1 MSMg01no122_l10.b1 CHROMAT_FILE:
MSMg01no122_l10.b1 PHD_FILE: MSMg01no122_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:29 2005
(781 letters)
>mm_chr1_147326802_147327978
Length = 1177
Score = 1317 bits (681), Expect = 0.0
Identities = 743/767 (96%), Gaps = 8/767 (1%)
Strand = Plus / Plus
Query: 17 ggaattcattgtatatataatttcctatgaatgaactattattttattatatttatattt 76
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 217 ggaactcattgtatatataatttcatatgaatgaactattattttattatatttatattt 276
Query: 77 taagcat--ctgtagactactattaaactcaataataactatataaattgcatcttccaa 134
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 277 taa--atagctgtagactactattaaactcaataataactatataaaatgcatcttccaa 334
Query: 135 acaatgtgttattaaacaccaaatattagtaatttgtgcaatggctaaattggtacttaa 194
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 335 acaatgtgttattaaacaccaaatattag----ttgtgcaatggctaaattggaacttaa 390
Query: 195 gagagtggtaaaggttaaaacttatggtcatatattattacttaatggatgagaaatttt 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gagagtggtaaaggttaaaacttatggtcatatattattacttaatggatgagaaatttt 450
Query: 255 tccaaaaattattacagtgatgaatttgcaagtgagttgactctataaatcatgaataga 314
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 451 tccaaaaattattacagtgatgaatttgcaagtgagttgactctataaattatgaataga 510
Query: 315 agtaaaagttaaaaagtataagttaacctaaaatgttatagagaaagttttagtttgtta 374
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||
Sbjct: 511 agtaaaagttaaaaagtataagttaacctaacatgttatagagaatgttttagtttatta 570
Query: 375 aatactataaagagataatgaatgatgataaggaacacaataataccatacacaaagcca 434
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aatactatgaagagatcatgaatgatgataaggaacacaataataccatacacaaagcca 630
Query: 435 ccaactctattggttacctatttgtcagctccactagtaaaaggtacaaaatactgaagt 494
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 631 ccaactctattggttgcctatttgtcagctccactagtaaaaggtataaaatactgaagt 690
Query: 495 agaattgctctgtgatgacctatatgactgctgtctgagagaaagagctaaatggacact 554
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ataattgctctgtgatgacctatatgactgctgtctgagagaaagagctaaatggacact 750
Query: 555 catttacaagatagaaaccttattacaaatggccaatctgcaaataaaaaaatattgcta 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 catttacaagatagaaaccttattacaaatggccaatctgcaaataaaaaaatattgcta 810
Query: 615 gatatatttgaggtgagacatgagataaactttagttcatatgagagttctgagaatcgg 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gatatatttgaggtgagacatgagataaactttagttcatatgagagttctgagaatcgg 870
Query: 675 aaatagtaagccatttatttgcaacaatgtatataaactggttacaagagcaatatgaat 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 aaatagtaagccatttatttgcaacaatgtatataaactggttacaagagcaatatgaat 930
Query: 735 caaataatctttaatttaaatacaaatttaaaaagcaaatacatgca 781
|| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 931 catataatctttaatttaaatgcaaatgtaaaaagcaaatacatgca 977
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 781
Length of database: 1177
Length adjustment: 10
Effective length of query: 771
Effective length of database: 1167
Effective search space: 899757
Effective search space used: 899757
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_l10.g1 MSMg01no122_l10.g1 CHROMAT_FILE:
MSMg01no122_l10.g1 PHD_FILE: MSMg01no122_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:29 2005
(599 letters)
>mm_chr1_147401307_147402305
Length = 999
Score = 1096 bits (567), Expect = 0.0
Identities = 593/605 (98%), Gaps = 7/605 (1%)
Strand = Plus / Minus
Query: 1 cactcatgttcaggcactgacaaccacttc-----ttttttttttttcacagctccaaat 55
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 931 cactcatgttcaggcactgacaaccacttctttttttttttttttttcacagctccaaat 872
Query: 56 tttcttctggcttgtagacaactgcggtcacatgtacaaggcctgctcctacagacactc 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 871 tttcttctggcttgtagacaactgcggtcacatgtacaaggcctgctcctacagacaccc 812
Query: 116 atgtgtactcaaaacattatgacagaaacttgtggctgaagagagcagcaggatagagca 175
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 811 atgtgtactcaaaacattatgacagaaatttgtggctgaagagagcagcaggatagagca 752
Query: 176 cgtactacttttgctggggccagagttatattccgagaacccacatggcagctcaccatg 235
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 751 cgtactacttttgctggggccagagttatgttccgagaacccacatggcagctcacaatg 692
Query: 236 tgctcttcttccagttcagtaagaggatttgtttgatagttgtttgtttatttatttatt 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tgctcttcttccagttcagtaagaggatttgtttgatagttgtttgtttatttatttatt 632
Query: 296 tgtttgtttgaattctttttgggacaaataatcataactggctgcccctgctgccaacag 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgtttgtttgaattctttttgggacaaataatcataactggctgcccctgctgccaacag 572
Query: 356 gcttctggaaattcatgcagatatgcagatatgtgggcttgacaatggagctcaggttca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gcttctggaaattcatgcagatatgcagatatgtgggcttgacaatggagctcaggttca 512
Query: 416 gctatctataaaatatttgataaaacattttataaaacaattttatatttattatttaat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gctatctataaaatatttgataaaacattttataaaacaattttatatttattatttaat 452
Query: 476 aaaaggaatttactttacctttgtgtttttgtttttgtttttttcctttttttgaaagag 535
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaaaggaatttactttacttttgtgtttttgtttttgtttttttcctttttttgaaagag 392
Query: 536 aggaagaaagaacataaatttcggggtacggagctagtagaatcc--ggggggggggagg 593
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 391 aggaagaaagaacataaatttcggggtacggagctagtagaatcctgggggggggggagg 332
Query: 594 agttg 598
|||||
Sbjct: 331 agttg 327
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
