BAC Information

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BAC

Clone NameMSMg01-122L13
Chromosome1 (Build37)
Map Location 80,094,062 - 80,094,326
singlet/doubletsinglet
Overlap genenone
Upstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064
Downstream geneLOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122L13.T7 (MSMg01no122_l13.b1)MSMg01-122L13.TJ (MSMg01no122_l13.g1)
ACCAG332506AG332507
length1,1431,125
length of high quality
(start - end)
295 (130 - 424)646 (130 - 775)
definitionCHROMAT_FILE: MSMg01no122_l13.b1 PHD_FILE: MSMg01no122_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:30 2005CHROMAT_FILE: MSMg01no122_l13.g1 PHD_FILE: MSMg01no122_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATCTATTTNNNAAACATTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTCTTGCCAGAATAAACTATAAAATCCCGAGCAAGCAGGA
ACACGGGGATGATTAACCTAAAATTTCCGTGGATTAACACATAAATATAA
AGTATCAATGTCTGCCAGTCATACAGTGGTAACATTGTGATGGGTGGGGA
TGATGGTGGTTTTCACCATTATGGCTTTTACTGACTGCTAAGAATTTGAT
AACTTTTCGACCAGATCCATGTAAAGAGATCATTCCCATCATTTATTTAA
AAAAACAACACAAAGTTTGTAGATAAGATATCAGAAAAGGAGCTACTGCA
AGGGACCCACTTAAGAAGTGTCAGTGTGAGAAAGAATAAACACTTTTTTT
TTTTTTAAAGGAGGGGGAGCATCAGAATCCACGGCAGGGAGCGAAACATT
TTTTTACCCCCGCTGAGAAAGAGACCAGCTTCACAAAAAAAAGAAGCCAG
CCAACCTCAACACGGCTCCCGCTGTGGTCCTGATGCTGAGAGAAAAGGCA
GGAGCCTCATCCAAAACCAGTGTATTTTCTCTTTCCTGAGTGGTATTGGT
AACTGAGCCTTCAAATGCATATTGCTCAAATCGATCTCCGATTAACATGT
TAAATCCTATTTAAACAATCATATTATCAATGTCCAATTCATATATATGG
AAAATTCTAGCCCATAGATGCCTTCTACTAATCCACTTTTCTTGTTCCTC
AACCCTCGTATTTTTTTTTTTTTTGAATTATCCGATTTGTCCTATCTACT
TTTCTTAATATTGTTTTTTTTATAATGTTCTTCTAATCCTCACCACATTT
TATTTATTTCCTCTCCTATCTACTCCCAAAAAAATTTTTACCTATTTTAT
CCTGATCTTCACTACTCTTGTTTTATATATCCCTCTTTTCTTTTTTGTCC
ATTTTTCCCTTCTTTCCTCTATTCTACTCTTTTTTTATTATATACTCCTT
TTTTTACTCTTTCTCTTTTTTCCTTCACTCTTACTTCTTATTTTTTATTT
CTTTTCCTCCTTCTTTATTTATTCATCTTCTCTATCACATACACCTTCTC
TCCTTCCAATTTTTTTTCTCGTTTTTTCTTTATTCTTTCCACC
NCCAAAATATNNNNAAAGAGGCGTAGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGACATAATGCTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTC
TGGAGATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAATCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAGATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACA
ATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAACA
CTATGCCCCTCCTTAGAAGTGGGAGCCAAACACCCTTGGAAGGAGTTACA
GAGACCAAGTTTGGAGTTGAGATAAAAGGATGGACCATGTAGACACTACC
ATATCCGGGGATCCCTCCCATAATCAGCTTCCCAATGCTGACACCATTGC
ATAACCTAGCAAGATTATGCTGAAAGGAACCCTGAATATAGCTGGCTCTT
GGCCAGAGTATGCCCTGGGCCCTAGCAAACATTAAAAGTGGGATGCTTCA
CAGTCCGGCTTATTGGAATGGAATCACCATGGCCCCCCCAATGGGAAGGG
AACCCTAAAACAAAGTTACCCCAAAGTAAGCCTTAAAGGGGGAATCTGGG
CATAACCCTCTATAGGTTGGGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_l13.b1 MSMg01no122_l13.b1 CHROMAT_FILE:
MSMg01no122_l13.b1 PHD_FILE: MSMg01no122_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:30 2005
         (295 letters)



>mm_chr1_80093858_80094554
          Length = 697

 Score =  478 bits (247), Expect = e-139
 Identities = 260/265 (98%), Gaps = 2/265 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ttaacacataaatataaagtatcaatgtctgccagtcatacagtggtaacattgtgatgg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttaacacataaatacaaagtatcaatgtctgccagtcatacagtggtaacattgtgatgg 410

                                                                       
Query: 65  gtggggatgatggtggttttcaccattatggcttttactgactgctaagaatttgataac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gtggggatgatggtggttttcaccattatggcttttactgactgctaagaatttgataac 350

                                                                       
Query: 125 ttttcgaccagatccatgtaaagagatcattcccatcatttatttaaaaaaacaa--cac 182
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  |||
Sbjct: 349 ttttcgaccagatccatgtaaagagatcattcccatcatttattaaaaaaaaaaaaacac 290

                                                                       
Query: 183 aaagtttgtagataagatatcagaaaaggagctactgcaagggacccacttaagaagtgt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aaagtttgtagataagatatcagaaaaggagctactgcaagggacccacttaagaagtgt 230

                                    
Query: 243 cagtgtgagaaagaataaacacttt 267
           |||||||||||||||||||||||||
Sbjct: 229 cagtgtgagaaagaataaacacttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 697
Length adjustment: 9
Effective length of query: 286
Effective length of database: 688
Effective search space:   196768
Effective search space used:   196768
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)