BAC Information

Click to search

BAC

Clone NameMSMg01-122P04
Chromosome1 (Build37)
Map Location 169,534,231 - 169,534,940
singlet/doubletsinglet
Overlap geneRxrg
Upstream geneEG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52
Downstream geneLmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122P04.T7 (MSMg01no122_p04.b1)MSMg01-122P04.TJ (MSMg01no122_p04.g1)
ACCAG332678AG332679
length1,1541,156
length of high quality
(start - end)		768 (37 - 804)726 (84 - 809)
definitionCHROMAT_FILE: MSMg01no122_p04.b1 PHD_FILE: MSMg01no122_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:59 2005CHROMAT_FILE: MSMg01no122_p04.g1 PHD_FILE: MSMg01no122_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGTACCNNNNNGGCATTGGCGCTATAGACTCCTAAGGGAGAGGATCCGC
GGAATTCTGCGTGTACATTGTTTCCTTACAATAGGAATGTCTGCCCTTAA
AGGATCAGACTGTCCTCTGGGACATGCTGAAGTAGGCATGACCTGGATTT
GGATCCTGCTTCCAGACAACTACAGGTTAGCACACCATTCCAGGGCAGGG
GCTCACGAGGCTGCCATGATTAGGGACTTCCCACCCCTGGTTTTCCAAAG
TCCTTGTCAGCAGGGCAGGGACCTTGCTAAGTCCTGACCCCTGTTTTTTC
ACCTTTGAATTAAAGCCCCTGGAGCCCCTGTCTCAGTTGTCAACTGCTGT
GCCTGGAAGAGGGCAGGGGTGGGGCACAGTAAGGATTTCTGGGTTAAAGG
TTACATCAAGCTCCTGTTAGGATTTCAGAATTAATATCTGAACTCTAAAA
ATGGAGAAACTTGTGATCTTTAAATCAAAGGAGCATTTATAAGAAGGTAG
GGGACCGGCAGGGAAAGTGCTCGATAAATATTTTAGGCTGTTTGCTTGAA
TTTCATTTCTGGGACTCATTACCTTTGTCTTTCTTTGCCATTTTACTAGT
CAGCAGTGGGAAGGGGAAGGAGCCTCGTGGAGGACTCGGGGTTTGGAGCA
CCCGTGTTTTCACAGGCCCAACAACGAGGGAGGCAAAGCAGAGGTCAGAG
TGCCTGGAAGTAGTATCATGCACTGATGGCTGAGTGCCTGTCCATCCGTC
CATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCA
TCCACTCATTTATCACAATGTCTAAAGACCTGCCATGTGGAGGACACGGG
AGCCAAGGACCCTTCCCCTTCTTGACCCGCTGGAGAATACACACAGCCCC
CCCAAAGTCTTGAAAAACATTTTGAAGCTCCCCTTATTTTCTGGAAACCA
CCCCCCCAGGCTGAAATTTAATTGCCCTGGACCCGGAAAAATATCCGGGT
AATTTAAAAACCTCCCCCCACCTCAAGTAAACCCTGGGCTTCAACTATTT
GGTATATGTGAACCCCCCGTCTCTAACCCTCAAATGGTTATAGCGTGGAC
CCTACTCCGTCCCCTTTGTAAAAAAAGATCCATATCCCCTTAATTTCCCA
ACAG

CATTTCCNNNNNATTGATGCGTAGCTGGXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGTGAGCTCATCTGATGC
TGATTTTGTTTAAGTTGTTAGACATTACTGTTTCAATCTGGTTGCTGGTT
GTAGATTGCCTAAATTGTTTATTTAGTTTGTTTTAATTTTCATATGCACC
TAGAAATTCTCCACTTCTTTTAGATTTTCTAAGTTATAAGAATATAGATT
TAAAGTATATCTTTATAATTTTATTGACTATTTGTTACAATGTCTACTTC
TTTTGCCTCTAGTTAATTTAATAGTCTCTCCATTGTGACTCTATTTTTTC
ATAGTTAATTTAGCTAAGGATTTTTTTACTTTCAATTTCTTAAATACTTT
ATTTTGTGTTTGTGAATACTTTGCCTGTACTCCTATTGGTGCACCATGAA
CCTGTTTATTGCCCATAGACACCAGAAGAAGGTGTCAGATTTCCTGGAAC
TGGATTCTTAGACAATTGTGAGCTGCTATACAGGTGTTGAGAATTGAACC
CAGGTCCTCTGGAAGAACAGCCAGTGTTCTTACCTGCTGAATCACCTCTC
CAGTCCTAGGCTTTATCAATCTTGTTCATTTTCTAAATGAACCGGCTCTT
CATTTCATTGGTTCTTTGTATTATTATTTTTTGTTGTTTTTTTTTTTTTG
GATTTTTAATCCATTTATGTCTGCCCTATTCTTAATTCTTTCTCCCCATC
TACTTGTCTAGGGCTTTGTGTTCCCAAGGCCTTAAGGTAAATGCTAAGCT
GCTTGTTTTCACTCTTGGATGTATTGTTGCTGTTGTTTTGATTTTGTTTG
TCTTGCTATTTTGGACTATAACCTTTCCTTGTAGAACTGCCCCCATCGAA
TCCCACAAATTTTGGGGTGTCCTGTTCTCATTTGCATTCCACTCTAGAAA
TTAATTTTTAAGCTTTTCTTATTTCCTCCTTGGAGCCCTTCCTTGGTTGA
AAAATAATGTTTTTCCAAACCTCCGCTAAATTTATGGGGCTCCCCCAAAA
AGTTTTCCCCCCTTGCTGGTTGGTAATCCAACCATTCTTTTATTTCTTTG
TGGCTCCCAAATATGGGCTCGTGACACAAGCCTAAATCTTCCTCTCTTCT
CCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_p04.b1 MSMg01no122_p04.b1 CHROMAT_FILE:
MSMg01no122_p04.b1 PHD_FILE: MSMg01no122_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:59 2005
         (768 letters)



>mm_chr1_169534017_169535184
          Length = 1168

 Score = 1266 bits (655), Expect = 0.0
 Identities = 697/711 (98%), Gaps = 2/711 (0%)
 Strand = Plus / Plus

                                                                       
Query: 15  ggaattctgcgtgtacattgtttccttacaataggaatgtctgcccttaaaggatcagac 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggaattctgcgtgtacattgtttccttacaataggaatgtctgcccttaaaggatcagac 274

                                                                       
Query: 75  tgtcctctgggacatgctgaagtaggcatgacctggatttggatcctgcttccagacaac 134
           ||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 275 tgtccactgggacatgctgaagtaagcatgacctggatttggctcctgcttccagacaac 334

                                                                       
Query: 135 tacaggttagcacaccattccagggcaggggctcacgaggctgccatgattagggacttc 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tacaggttagcacaccattccagggcaggggctcacgaggctgccatgattagggacttc 394

                                                                       
Query: 195 ccacccctggttttccaaagtccttgtcagcagggcagggaccttgctaagtcctgaccc 254
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccacccctggtcttccaaagcccttgtcagcagggcagggaccttgctaagtcctgaccc 454

                                                                       
Query: 255 ctgttttttcacctttgaattaaagcccctggagcccctgtctc-agttgtcaactgctg 313
           |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| 
Sbjct: 455 ctgttttttcacctttgaattaaagcccctggagcccctgtctcca-ttgtcagctgctc 513

                                                                       
Query: 314 tgcctggaagagggcaggggtggggcacagtaaggatttctgggttaaaggttacatcaa 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgcctggaagagggcaggggtggggcacagtaaggatttctgggttaaaggttacatcaa 573

                                                                       
Query: 374 gctcctgttaggatttcagaattaatatctgaactctaaaaatggagaaacttgtgatct 433
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gctcctgttaggatttcagaactaatatctgaactctaaaaatggagaaacttgtgatct 633

                                                                       
Query: 434 ttaaatcaaaggagcatttataagaaggtaggggaccggcagggaaagtgctcgataaat 493
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 634 ttaaatcaaaggagcatttataagaaggtagtggaccggcagggaaagtgctcgataaat 693

                                                                       
Query: 494 attttaggctgtttgcttgaatttcatttctgggactcattacctttgtctttctttgcc 553
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 attttaggctgtttgcttgaatttcatttctgggactcattacctttgtctttctttgcc 753

                                                                       
Query: 554 attttactagtcagcagtgggaaggggaaggagcctcgtggaggactcggggtttggagc 613
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 attttactagtcagcagtgggaaggggaaggagcctcgtggaggactcggggtttggagc 813

                                                                       
Query: 614 acccgtgttttcacaggcccaacaacgagggaggcaaagcagaggtcagagtgcctggaa 673
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 814 acccgtgttttcacaggcccaacaatgagggaggcaaagcagaggtcagagtgcctggaa 873

                                                              
Query: 674 gtagtatcatgcactgatggctgagtgcctgtccatccgtccatccatcca 724
           ||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 874 gtagtatcatgcactgatggcagagtgcctgtccatccatccatccatcca 924


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 768
Length of database: 1168
Length adjustment: 10
Effective length of query: 758
Effective length of database: 1158
Effective search space:   877764
Effective search space used:   877764
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |