BAC Information

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BAC

Clone NameMSMg01-123I19
Chromosome1 (Build37)
Map Location 164,856,435 - 164,856,809
singlet/doubletsinglet
Overlap geneFmo6
Upstream genePigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2
Downstream geneFmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123I19.T7 (MSMg01no123_i19.b1)MSMg01-123I19.TJ (MSMg01no123_i19.g1)
ACCAG333125AG333126
length1,2601,247
length of high quality
(start - end)
377 (82 - 458)668 (85 - 752)
definitionCHROMAT_FILE: MSMg01no123_i19.b1 PHD_FILE: MSMg01no123_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:26 2005CHROMAT_FILE: MSMg01no123_i19.g1 PHD_FILE: MSMg01no123_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTNGGCTCAGTGCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTCTATTTGTGGAACCCTTTATTTCTGTCTTGCAGTATTTTCC
TATGGAGGAAATACCTTTATAAGATGACTCAGTCATTGAAAAATATATAA
AAAGGCACCAATATGAGGGTCAGAGCACATCCTTAGTGAATCTTTAAATC
TTGCACAGAAAACTACTTCTGAGGGTTTACTTAGTATTGAACATCTGGTA
AGTTGATGTGGAATAAATAATGCTCGGGCATTTTTATGAGTATAGCAAAC
TTATGTCATTTGCTTACAGCTGCTCGACAGTGACCCCGCTTTCTCCTCCG
CTGACCTCATCTTCTACCCACTCAGTAAATACAGCTGTGTCTCAAGGTTT
GACCCCTTGTCTCTTCTGTTCTCTGTACAGATTCTCTCCAGAAATACAAG
CAACTTCCTTAGCACACATGCCTATACATATTTTGAGCCTGCTCATCCAC
TGCTATCTAGTCTAGCTTTCCAACTGCAAAACCATAGTGCTGCCTCTATT
GAAGCATATTAATAACTGACCTACCTCCATTTTCTCCCTACCTATATTTG
ATTTTCCCACTTCTTAGAACAATGAACCTAACCACCCTGTTACCTAAGCT
TCATGTCTACATAAACATTGATCTCAGAGACACAGTATTGCTTTTATTCA
TTCCATGACCTCAAATGCTGCATTGCTTCAAAGTCTTATAAAACCATGAA
GACCGCTTCAAGAGTTTATACCCACTTGCTACTTGGAATGCTTCATTTCT
GCCTTAGGAGTACTCTTCTGACAGGACTGCATTGATTCAGTGTTTCTGCC
TCAAAGTTATTTCTGATACATCACAGTCTTCATTTATGGGGAATGAACAT
AGGGCTTCACTGTGCTTAGTACACACTCCTCCTCTGAGGAAGTCCCATAT
AATTCCTTATATTCTAATCCCATGATCTAAAGTCTTGTACCCATTAGGCC
CCTGGTTTGGTCTTTACCTTCCTGTCTTTTTCTTACGAACCTCCCCTTGG
TAAAAGCTGACTTGTTTATTTTTTTTTCCGGGGATCCCCTCTCAATTTTC
TTTTTTATATAAACACCACCTTGATTTTTGTTTTTGGGATGCCCCTATTT
TCCCTTACTCTATTGGGTTTCCTCTTTTTCCGGCCCTCTTCTTGTATACA
TAACATTTCGCCTATTATTACAATACTATACTTAATTACCCTCCTCTCTA
ACTTTCTTTN
CCCCGCTAGATGCGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTTTAAAGACCCCGTGTGGAGCAGAGACTAA
ATGAATGACCCCCTTTAGATTACCCCACCTGGGGATCATCCCATACACAG
TCACCAAATCCAGAAGCTGTTATGGATGCCAACAAGTGCTTACTGACAGA
AGCCTCTTATAGCTCTCTCCAGAGAGGCACCACAACTGCCTGACAAATAC
AGAGGTGGATCCTTGCAGCCTACCATTGGACTGAGCACAGAGTCCCCAGT
GAAGGAGCTAGAGAAAGGACCCAAGGAGCTGAAGGGGTTAGCAGTCCTAT
AGGAGGAATAACAATATGAACTAGCCAGTACCCTCAGAGCTCCCAGCGAC
TAAATCTTCAACCAAAGAGCACACATGGTGGGAGTCATGGCTCCAGCTGC
ATATGAAGCTGAGTATGGCCTAATCGTTCATCAATGGGAAGAGAGGCCCT
TGGTCATGTGAAGGCTCTATACCCCAGTATAGAGGAATGGCAGGGCCAGG
AAGCATCTGGGGGTTCATTGGTGATCAGAAGGAGGGGGCAGGGGACAGGG
GCTTTTCATAGGGGAAACCAGGAATGGTGACAACATTTGAAATGTAAATA
AAGTAAATATCTAATTTTAAAACGTTGAAAAAATATTCATTGTCCTTTAA
AATTACACATACCAAACCACTCCCAAGAAGATAGAAACCTATTCTATTTA
GAATGTCCCTCACAGGAAACTGATAGTTCTGCCAAGTTATTATATTTCTG
GGTAAGGTAATACGCTATTAATATGATTCGACCTACATTTTTATGTTGCT
ACCATTTTTATTTTAACTTGTGCAGTCCATGCACTGTTCATCATGAAAGA
GGAAAATCTTTTAACATTAACTTTCTCTAAAGTGTCCCTTTCCCTAAAAC
TGTATGCCTTCCCCATCACCAGGTTGTGTGTAGTTAGTCACTGATTGGTA
ATATCCGCTCCCTTCTGGGCCCTCCGCTTCCTTAAGAAATGCCCTAAAGG
CTTCTGCCTAAATTGTTTCGGGCATTAAAAGAAAGTGGACCAAGTCTCTG
GAAAATAAAAAATTTTTTTGGAACCAATTTTTTCCCAATCTCTGGTATTC
CCCCTTTGGTGATCTCCCCTCTTTTGCCAATATTCAAAACGGGCTACCCC
CGGGTACAAAATTTTTGTCCTCTGGTTTCCCTCTTCTCTATGACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_i19.b1 MSMg01no123_i19.b1 CHROMAT_FILE:
MSMg01no123_i19.b1 PHD_FILE: MSMg01no123_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:26 2005
         (377 letters)



>mm_chr1_164856235_164857009
          Length = 775

 Score =  636 bits (329), Expect = 0.0
 Identities = 365/379 (96%), Gaps = 6/379 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtcttgcagtattttcctatggaggaaatacctt--tataagatgactcagtcattga 58
           ||||||||||||||||||||||||||||||||   |  ||||||||||| ||||||||||
Sbjct: 201 ctgtcttgcagtattttcctatggaggaaata--atgatataagatgacccagtcattga 258

                                                                       
Query: 59  aaaatatataaaaaggcaccaatatgagggtcagagcacatccttagtgaatctttaaat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 259 aaaatatataaaaaggcaccaatatgagggtcagagcacatccttagtgaatcttcaaat 318

                                                                       
Query: 119 cttgcacagaaaactacttctgagggtttacttagtattgaacatctggtaagttgatgt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cttgcacagaaaactacttctgagggtttacttagtattgaacatctggtaagttgatgt 378

                                                                       
Query: 179 ggaataaataatgctcgggcatttttatgagtatagcaaacttatgtcatttgcttacag 238
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 379 ggaataaataatgctcgggcatttttatgagtatagcaaac--atgtcatttgcttacag 436

                                                                       
Query: 239 ctgctcgacagtgaccccgctttctcctccgctgacctcatcttctacccactcagtaaa 298
           ||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 437 ctgctcgacagtgactccactttctcctctgctgacctcatcttctacccactcagtaaa 496

                                                                       
Query: 299 tacagctgtgtctcaaggtttgaccccttgtctcttctgttctctgtacagattctctcc 358
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 497 tacagctgtgtctcaaggtttgaccccaggtctcttctgttctctgtacagattctctcc 556

                              
Query: 359 agaaatacaagcaacttcc 377
           |||||||||||||||||||
Sbjct: 557 agaaatacaagcaacttcc 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 775
Length adjustment: 9
Effective length of query: 368
Effective length of database: 766
Effective search space:   281888
Effective search space used:   281888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)