Query= MSMg01no123_l05.b1 MSMg01no123_l05.b1 CHROMAT_FILE:
MSMg01no123_l05.b1 PHD_FILE: MSMg01no123_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:46 2005
(276 letters)
>mm_chr1_134921606_134922283
Length = 678
Score = 514 bits (266), Expect = e-150
Identities = 275/278 (98%), Gaps = 2/278 (0%)
Strand = Plus / Minus
Query: 1 tcggaggtccggaggctctcttcccggactagtgtgtactcaatggtagattcttcagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcggaggtccggaggctctcttcccggactagtgtgtactcaatggtagattcttcagcc 419
Query: 61 tttctagctct-tagtcctccagggtccgctctatggtt-ccccggcctccccggaagct 118
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 418 tttctagctctctagtcctccagggtccgctctatggttcccccggcctccccggaagct 359
Query: 119 cttgagaacgctgggtttgagaggccggaagtggtgctgccgttgctcgcagtttcaaaa 178
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cttgcgaacgctgggtttgagaggccggaagtggtgctgccgttgctcgcagtttcaaaa 299
Query: 179 tgcagtgcaggccttagggtctccggctgccacccctcccccagctaggagggggagcga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgcagtgcaggccttagggtctccggctgccacccctcccccagctaggagggggagcga 239
Query: 239 ctcatggagcggccgtaaggtgtggtgttggggtctgg 276
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ctcatggagcggccgtaaggtgtggtgttggggtctgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 678
Length adjustment: 9
Effective length of query: 267
Effective length of database: 669
Effective search space: 178623
Effective search space used: 178623
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no123_l05.g1 MSMg01no123_l05.g1 CHROMAT_FILE:
MSMg01no123_l05.g1 PHD_FILE: MSMg01no123_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:46 2005
(276 letters)
>mm_chr1_134788295_134788970
Length = 676
Score = 518 bits (268), Expect = e-151
Identities = 274/276 (99%)
Strand = Plus / Plus
Query: 1 ccgaagacctgcctcgggaaggctctaagcaatgcagggagagaatgctgtccaactcgg 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccgaagacctgccttgggaaggctctaagcaatgcagggagagaatgctgtccaactcgg 260
Query: 61 acaaggtgagcattttcagggctgacttgatgagaagggcttagggttaaggagctgagc 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaggtgagcattttcagggctgacttgatgagaagggcttagggttaaggagctgagc 320
Query: 121 ggtgatcattctgctaccttgaagaacttttgaagcagcaaatggccaccaaggaccacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgatcattctgctaccttgaagaacttttgaagcagcaaatggccaccaaggaccacc 380
Query: 181 ccagccaccagctaaaagaggagcagggagtacctgctctctccttgtcagatgagcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagccaccagctaaaagaggagcagggagtacctgctctctccttgtcagatgagcatg 440
Query: 241 tcacagctcctttgactgtggcaagaacagaataga 276
||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacagctcctttgactgtggcaagaacagaataga 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space: 178089
Effective search space used: 178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
