BAC Information

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BAC

Clone NameMSMg01-123L23
Chromosome1 (Build37)
Map Location 33,077,295 - 33,077,565
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041238, Khdrbs2, EG408191
Downstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123L23.T7 (MSMg01no123_l23.b1)MSMg01-123L23.TJ (MSMg01no123_l23.g1)
ACCAG333274AG333275
length1,2221,234
length of high quality
(start - end)
269 (133 - 401)264 (127 - 390)
definitionCHROMAT_FILE: MSMg01no123_l23.b1 PHD_FILE: MSMg01no123_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:54 2005CHROMAT_FILE: MSMg01no123_l23.g1 PHD_FILE: MSMg01no123_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGATTATTCNNNNCATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATGTATGAAATGCATCACTTGTACAAGTGACTGTTCT
GCTGGGTTGTTACTGTCATCATGTTTATAAGTATTTTATTTGGGGATGGG
GTTCTCCCCACGCATGCAGACTGGTTTGGAAACCATTATCTAGACTAAGT
TAGCCTTGAGCTCACAGAGATCTGCCTGTCTCTGTTTCTGCCTCCCAAGT
ACTGGGATTAATGGTGGGCACCACTAGTCTGGCAAGAAATCATTTTTAAT
AGAGTGTATTTTCATCTTTCTCCATAATTTATTCGGTAGCTATAGATGCT
AAGTTACCAATTAACCATCAATGATTTTTTTTTTGCAACTTACGTCTAAA
GTTCTCTAAACAATTTTGTTCTTTCAACTATATGGTAAGACTTTGGATAA
GACTCAGATTTTATTTTTTTTTTACCCCCCTTTTAAGATGTCCCCCCTCC
CCAAAAAAAAGGGGGGTTTCCNCTTATTTCATAGAAAATGAAACTCAAAA
CTAACAAAGTGTAACTAATTAAGCTGGACGCAGCACAGATTGTACGGCGA
ACCCCCGCATGAGTCCCGTCCTTGCAACCCCCTCACAACTGTTCTTTATC
CCGTGTTCCCCACCCAGTCTCCGCCCCTCCCTCACCGATGCTCCGTTCTA
CCCGCACACCACTCCTCACACCCAATCCCCACTCTCCCTACTTACTTTAT
TTGCCTACTCCACTCCGTAAGGCTTCCCCCCCCTACCTCTCCTTTCCCCT
CCTGCACCCTTCCCCCACTACCCCCTCTTAACTTCTCTTTTCTTTTTTCT
TTCTAATCTTCACCCTCTGTCTCTCGCTCTTTTCTCTACAATCCTTTTTT
ACCTTTTCTCCTCTACCCCTCCTTCCTCCCTTTCCCTCTCTACCCTCTTC
CTCCTCCTCCCTTTAATCGCCTCACTCCTCTTCCTTGCCTCTCTCTCGTC
TTTTCTCTCCATCTCCACATCTCTCCCTCCTCCCCCCTCCGGTTTCTTCT
TAGTCCCTTCCCCCGCGTCTTCTCCTTCCCTCTCTTTTTCTCTCCCTCTC
CCCTTGTGTCTACTCTCTTCCCCTCCCCTCTCTCCTATCCTTCTCTTTCC
CTCTTCCCCCTCTCTTGATTCTCTCATCTCACTCTTCCTCCCATCATCTC
TCTCTTCCCTCATTCACTTCTC
ATTTCTCTNNNNAATGATTGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGATCTTTCAAAACTTTTAT
CATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGA
TGATCATGTGGTTTTTATCTTTGAGTTTGTTTATATAATGGATTACATTG
ATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTAC
TTGGTCAGGATGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCGA
GAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTG
AAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAAT
AGCGGCTTCTTTAAATGAGTTGCGTAGAGTACCTTCTACTTCTATCTTGT
GAAATAGTTTGTTCATAACTGGAATTAGATCTTCTTTGAAGGTCCTGATA
GAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGCTGGCAGAC
TATTAATAACTGCTTCTATTTCTTCAGGTGATATGGCACTGTTTACAAGG
CCAACTTGATCCTGCTTCACCTTTGGTACCTGGTATCTGTTCAGAAATTT
GTCCCTTTCCTCCCGTCTTTCCAGTTTTGTTGCAGTATAAGCTTTTGCAC
ACGGATCTGATGCCGCTTTGCATTTCTTCCGCGTCCGTCGTTATGCCTCC
CTCTTTCTTTCCGATTTTGTTGACTACGATTTTGTCCCCTTTGCCCCTCT
AACGATTCCACGCTGTCGCCAACTCGCCCCCCAATTCCCCCCCCCTCCAA
TATGCCTCCTCACCCTCCTGTTGTTCCTCCGTTGCTTAATCCCATCACTC
TCGCCCTACCTGCCCACGCCTCACTTTTACCAACTACCTTGTCCCCCCTC
CCTTTTCCCCGTGTACCCTTCCATTCCCTTCCCTTGTCTCTTCTCACTCT
CTTCCCTCCTATCTTATCTTTCTCCCCAACTCCCTATCCATACACTTTCT
CTCCTACACCAACCTACCTCTTCTTTTTCCCCCCCTTTTCTCTTCCCCCC
TCTCTCTCTTTTCCTCCTCCACTCTCCATCGCTCCCCCTCTCCCTCTTCC
TTCCTTTTTCTCACCCCATCTTTCTCTCTATTCCCCTATACTTTTCCCTT
CCTCTCCTCCTCTTTTCCCTACCCTCTCATCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_l23.b1 MSMg01no123_l23.b1 CHROMAT_FILE:
MSMg01no123_l23.b1 PHD_FILE: MSMg01no123_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:54 2005
         (269 letters)



>mm_chr1_33077095_33077765
          Length = 671

 Score =  505 bits (261), Expect = e-147
 Identities = 268/271 (98%), Gaps = 2/271 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttatttggggatggggttctccccacgcatgcagactggtttggaaaccattatcta 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 attttatttggggatggggttctcaccacgcatgcagactggtttggaaaccattatcta 260

                                                                       
Query: 61  gactaagttagccttgagctcacagagatctgcctgtctctgtttctgcctcccaagtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactaagttagccttgagctcacagagatctgcctgtctctgtttctgcctcccaagtac 320

                                                                       
Query: 121 tgggattaatggtgggcaccactagtctggcaagaaatcatttttaatagagtgtatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggattaatggtgggcaccactagtctggcaagaaatcatttttaatagagtgtatttt 380

                                                                       
Query: 181 catctttctccataatttattcggtagctatagatgctaagttaccaattaaccatcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctttctccataatttattcggtagctatagatgctaagttaccaattaaccatcaat 440

                                          
Query: 241 gatttttttttt--gcaacttacgtctaaag 269
           ||||||||||||  |||||||||||||||||
Sbjct: 441 gattttttttttttgcaacttacgtctaaag 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 671
Length adjustment: 9
Effective length of query: 260
Effective length of database: 662
Effective search space:   172120
Effective search space used:   172120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)