BAC Information

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BAC

Clone NameMSMg01-123O13
Chromosome1 (Build37)
Map Location 110,265,828 - 110,266,195
singlet/doubletsinglet
Overlap genenone
Upstream geneSerpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
Downstream geneLOC435640, EG626474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123O13.T7 (MSMg01no123_o13.b1)MSMg01-123O13.TJ (MSMg01no123_o13.g1)
ACCAG333396AG333397
length1,2421,222
length of high quality
(start - end)
369 (131 - 499)661 (121 - 781)
definitionCHROMAT_FILE: MSMg01no123_o13.b1 PHD_FILE: MSMg01no123_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:16 2005CHROMAT_FILE: MSMg01no123_o13.g1 PHD_FILE: MSMg01no123_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCAGTTTTNNNNNGGTCAGTGGGCGCTATAGACTCACTATGGGAGAGG
ATCCGCGGAATTCTCTAATCCATCCTCCCTTTTATTGCCATCCATGGTCA
GTCAGAGTGTACCTGGATACTTTTACTAATTGATCTTTATAGCTTTTACT
ACATACATAGTATCTTCTTAACTGGTAGGATAGGGTGTTAATATCTTGGA
ATAGGGTGTTATATGACTATCAGTAACAGACACTAATCTACCTCTGAGTA
AGTCAGGTAAATGTCTAACAACTTACATTTCTGGGAAAAGTGTGAATAAA
TCCAAAACACTTAACATCTATGGAAATCCAGGAAGGACTGCTGTTTTCCC
CTCCACCAAAGTAAATAAGTTCACGCACTACAGGACTTTTTTGAATATTA
CAGTGAACACTTGCTTAAATGAGACACTCTTGGCCATTTGTATTGAAGAA
CCCACACTTATTTTTGTTTGTCCGGGCCATAAATCTTTATTCTGAATGAA
AGAAACATAGCAAATGTTGGCATAACCTTTTGGTGCTTTCACTATAATTA
ACAATGGTTTTGAGCCTTGAGTCTACAGAGCTGATGCAGATGCTATGATG
CTGCTACTTGACTTGTTGCATAGACCACCCTTGGGGCTATAGAAACATTA
CTGGGAAATCGTATTCAAGATTATGATTTCCACTGGCTTCCTCTGAAACT
TGACGACTGAATATGACTTGGAGTTAGCTTGAAACCATATACTTGCAAAC
TTAGAAAGAACCCAAGGCCACATGTGTCACCTAGAAATCATATCCACAAG
AATGTGCCGGCTTTTGCTTTTGTTCTCTCTTTACATTTCTTGAAAGTGCC
CAATACAGATTAAAGAATGTTAGACCAAAATATCCTTTCTCCACTCCCCT
GGTTTTTTTTACAAAAGGTCCTGGACACCTGTTAACGAGTATTCCTTCCT
AGAGATTCTCCTAAAAGCCTGGTCCCGCTTTCCTGATGATTTTGCCTAAT
CAAAAATTTGATGTCGATCCTTCGGTCTTGTACATCTATTCAACCCTCCA
ATCCTGTTGGGGATAAATTACAATATTGGGCCTGGGCGGCCCTGTTTCAC
TTGGACAACAAACTTCAAACTGTTTTATGGGTGTCCTGGCCCGGGCGCCC
CCCTTTGTAATAATCTGGTATACATTTTTTCTCTAAAACCTGTTCATTCT
TTCCCCTGAACCCCTAAGGGTTTGGACGTGCTCACATTGTAA
NNNGGGGTGAAGGNTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTTTTAATCTTTCCATGACTTTTATCATGAA
TGGGTGTTGCATTTTGTTAAATCCTTTCTCAGTATCTAATGAGACGATCA
TGTGATATTTGTCTTTGAGTTTGTTTATAAACTGGATTACATTGATGGAT
TTCCATATATTAAACCATCCCTGCATCCCTGGGATGAAGCCTATTTGGTC
ATGATGGATGATCATTTGATGTGTTCTTGGATTCGGTTTGCAAGGATTTT
CCTGAGTACTTTTGCATCGATATTCACAAGGGAAATTGGTCTGAAGTTCT
CTACCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATGGTGGCT
TCATAGAATGAATTGGGTAGATAATCTTCTGTTTCTATTTTGTCCAATAG
TTTGAGGAGAGTTGGAATTAGGTCTTCTTTGAAGATCTGACAGAACTGTG
CACTAAATCCATCTGGTCCTGGGCTTTTTTTTTTTTTTTTTTTTGGTTGG
GAGACTATTGATGACTGCTTCTATCTCCATAGGGGAAAAGGGACTGTTAA
GATCATTAATCTGATCCTCATTTAAATTTGGTACCTGGTATCTCTCTAGG
AAGTTGTACATTTTGTACAGGTTTTCTAGTTTTGTTGATTATAGCCTTTT
GTAGTAGGAACTAATGATGCTTTGGATTTCCTCAGGTTCTGTTGTTATGT
CTCCCTTTTCATTTCTGATATTGTTAATTAGGATACTGTCCCTGTGCTCT
CTAGTTAGTCCGGCTAAGGATTTATTTATCCTGTTCATTTTCTCCCAGAA
CCAATTCCTAATTTGGATGATTCTCATAACCTCCTTTTGTTTCCACTTGG
CTGAATTCCGCCCTGAGTTTTATTATTTTCTGCCGCCTACTCCCCCTGGA
AGAATTTGTTTCCTTTTTGTTCCAAAACTTTAAGGCTGTGGCCTTAATCC
GGGTTTTCTAATTCCTGCCCAAACTTCTTGTACTCAAAAACAATTTTGGC
TAAGAAAAGGGTTTTATTCGGTTTAACCTTTTCCCCATCGGGGGTTGTAA
CCCCCCCAAGGATATCCTCGACTTGGTAACTCCTTACCTGTCTTTAAAAA
CCTCCGTTATCTTGATACTACAAGCTCTCTTGAGGGATATATCTCCTTTT
TCGCCGGTGGCTCCTCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_o13.b1 MSMg01no123_o13.b1 CHROMAT_FILE:
MSMg01no123_o13.b1 PHD_FILE: MSMg01no123_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:16 2005
         (369 letters)



>mm_chr1_110265628_110266396
          Length = 769

 Score =  658 bits (340), Expect = 0.0
 Identities = 361/368 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatctttatagcttttactacatacatagtatcttcttaactggtaggatagggtgtta 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgatcttcatagcttttactacatacatagtatcttcttaactggtaggatagggtgtta 509

                                                                       
Query: 61  atatcttggaatagggtgttatatgactatcagtaacagacactaatctacctctgagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atatcttggaatagggtgttatatgactatcagtaacagacactaatctacctctgagta 449

                                                                       
Query: 121 agtcaggtaaatgtctaacaacttacatttctgggaaaagtgtgaataaatccaaaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agtcaggtaaatgtctaacaacttacatttctgggaaaagtgtgaataaatccaaaacac 389

                                                                       
Query: 181 ttaacatctatggaaatccaggaaggactgctgttttcccctccaccaaagtaaataagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttaacatctatggaaatccaggaaggactgctgttttcccctccaccaaagtaaataagt 329

                                                                       
Query: 241 tcacgcactacaggacttttttgaatattacagtgaacacttgcttaaatgagacactct 300
           ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 328 tcacgcactacaggacttttttgaatattacagcgaacacatgcttaaatgagacactct 269

                                                                       
Query: 301 tggccatttgtattgaagaacccacacttatttttgtttgtccgggccataaatctttat 360
           |||||||||||||||||||||||||||||| ||||||||||  ||||||||||| |||||
Sbjct: 268 tggccatttgtattgaagaacccacacttagttttgtttgtttgggccataaatatttat 209

                   
Query: 361 tctgaatg 368
           ||||||||
Sbjct: 208 tctgaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)