BAC Information

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BAC

Clone NameMSMg01-123P14
Chromosome1 (Build37)
Map Location 110,720,031 - 110,720,362
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435640, EG626474
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123P14.T7 (MSMg01no123_p14.b1)MSMg01-123P14.TJ (MSMg01no123_p14.g1)
ACCAG333446AG333447
length1,2851,265
length of high quality
(start - end)
335 (130 - 464)367 (133 - 499)
definitionCHROMAT_FILE: MSMg01no123_p14.b1 PHD_FILE: MSMg01no123_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:25 2005CHROMAT_FILE: MSMg01no123_p14.g1 PHD_FILE: MSMg01no123_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTATCTTTNNNGGATCATTGGGCGCTATAGACTACTATAGGGAGAGGATC
CGCGGAATTCCTTAGAGCCAAAGTTACTTATATTTTTCAATCTTCTATGC
TCATAGCCTGGAGAATTACTTTAATGTTGTCAAATTGATACATTTGAATA
ATTGGCATTTTTAAAATGTTTGAAGTGCTATTATTGTCTAGAAAATTTCT
TAATTATGTTTTATAAGTAACTTATGATTAAATGATAATCAAGGTAATAT
ATATTTAAACTGTACACCCACACCCATGTAAACACTCACACACACATATA
CACACAGATTTATGCTATTTAAAATAAAAATCATGTATTCACAGATATGT
TTTGAAGCAAAGAAGGTCTCACTCAGTAACTGTCATCTTTCTCAGAAAAA
GGTAAGATGCCTATATCCAGCTTACCCTTTCAGAGTAGGAGAAATAACCT
CTGGAGACTGATTTTTTATAGAGGGCAGTGAGTGCAGTCACTCAGCTTGA
AAGACAGTCCATGTGAATTCACAATTCTCTTACTTCCATAAAATCTACAA
TTAATTCCTTCCTATCTCCCTGTTGTCATTGCTTCAGAAGACCTTATGTG
AAGAGGTTAATAAAGAAAATTGTGTTTTCTGAAATGATTAAGTTAGAGGC
ATCCGAGGAATAGAAATAAGTGCTCTGACTGTTCCAAATATAACCAACTG
CACATCATTTCTGAAATGTTAAGACAATAATTTTAGTACAGTAGTCTAAA
AATTAAATAAGAAAAAGTCTATCTCCATCTATCTATCTATCTATCCATCT
ATCTATCTNATCTATCTAACGCCTAGAGTGAAAGAAGATTGATTTAGGAC
TTTTCTAACCCTCTTTTTTGGCTGTGAAAATTTTCCGTTGTAAAACTTAA
AAATACTTAGGGTTAACTGTGCTAAACTTTGAATCAATAAAAAAACTGCT
TTTCCCATGTACACATATACTTTATTCCTTGGTCCATTGGCAATGGGCCC
ATTCTCTGAAAAAAAACTCCCATATTTTTTTTACTTAATATATGGCACAT
TGAACCCTTTCTATTTTTTTTAGAATAACTATAATCTTTTCCCCCCTTTG
TGTTTTTACTCCCTATATGCACTCAGTCTGAAAATACAAGGCTGTTCTTT
TCTACATTTATAGGCTAAACATCCGCTAAATACTCTTCCTTCCGTTCTTT
CTAATCTCACGTCTTCACACTATATCGCTCATAATGGCTCTTCTTTTATA
CTTTCTCTCCTCCTATTTTCTCTACTGTCCTCTTT
NAAATTTTTTNNNATATGACGTGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTAAACGACCAGGATATGGCC
CTGGCCTTTATTAGGTTGGCTATTAAAAAACTAATGACTTTAATTTCTTT
TTGGGTTATATGGCTGCTTTTAAAATTATACCTAATTTGGATTTAACTTT
GATAAGTGGTATCTGTATAAACAAATTTTTATTTTATTAAAAATTCCAAT
GTTTATGTACTACAGGCTTTGAAGTAAGACCTAATGATTTGTTCAATTTC
CTCATTGTCTATTGCTATGTCTTTCTTTTCGTTAGTGATTCTTTTGACTT
GTGTACTCTTTCTGTATATTTTTATTAGTTTGCCTAAGCAATTGTCCATT
TGCTGATTAATTCATAGAACCAGTCCTTTGCTTTATTAATTATTTATATG
GTTTTCTTTTTTTTTTATGTTAACTTTAGCCCTAATTTTGATTATCTCCA
AATATCCAGTCCCTGTCTTCAACTACTCTTTTTTGTGCTTCCTTCTAATT
TTTTTTCTAGAGCTTTCAGGTATACTTTTAAATTGCTGATATGAAAACTT
TCTAATTTCTCTACAGAGACACTTATATCTGTTATTTCCAACATTTTCCT
GTGTAGTATGTCTGGAACTCTTGTCCACTGGTAGAGTTGGGTGTAGGAGT
ATCTCACTATTAATCTGTGATTCCATGTGAGATTTAAGATTTAGCAATTA
TTCTTTTTTAAATGTATGTGTCCTTGTGCTTAGGTCACAGTTACCTTGTG
AGTAGATGCCCTGTATCACTTTTATTCCTAGTGATTGAAAATTAATTATT
TTCCTTAACACCTACATCCTCCTTCCTAATAGATTGCTCCTACCAATTTA
CCTCCATGGAACCTTGAAGTTTCCAAACCTTATTCTAAACCCTAAATGAT
TCCCGTTTCCTTACCAACCCAATAACTTTTTAATTTGAAGTTTTGGATTT
TTGGCCCCTCTATTTTTACCCCCCCAATTGCCAATCTTTGTTGGGCCCCA
CACATTCCTTGACCCTAAGAGCTTTTTTTAACAAACTTACCCTCAACTTG
CCAAAAAAAAAACGGCGCTTCTCCTCCCACAAACAAACTTTTCTCCACCC
CCCCCCTCTAGAGGGGGAGGCTTTTCCCACTATCCCTTTCTTTAAAAATC
ACCGCGTCATTTGTCAATACCTCCTCAACCACTACCCCGCGGCTCTTATA
TCTTCTATGATGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_p14.b1 MSMg01no123_p14.b1 CHROMAT_FILE:
MSMg01no123_p14.b1 PHD_FILE: MSMg01no123_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:25 2005
         (335 letters)



>mm_chr1_110719831_110720565
          Length = 735

 Score =  611 bits (316), Expect = e-179
 Identities = 328/332 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaattgatacatttgaataattggcatttttaaaatgtttgaagtgctattattgtct 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaagttgatacatttgaataattggcatttttaaaatgtttgaagtgctattattgtct 260

                                                                       
Query: 61  agaaaatttcttaattatgttttataagtaacttatgattaaatgataatcaaggtaata 120
           | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ataaaatttcttaattatgttttataagtaacttatgataaaatgataatcaaggtaata 320

                                                                       
Query: 121 tatatttaaactgtacacccacacccatgtaaacactcacacacacatatacacacagat 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tatatttaaactgtacacccacacccatgaaaacactcacacacacatatacacacagat 380

                                                                       
Query: 181 ttatgctatttaaaataaaaatcatgtattcacagatatgttttgaagcaaagaaggtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatgctatttaaaataaaaatcatgtattcacagatatgttttgaagcaaagaaggtct 440

                                                                       
Query: 241 cactcagtaactgtcatctttctcagaaaaaggtaagatgcctatatccagcttaccctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactcagtaactgtcatctttctcagaaaaaggtaagatgcctatatccagcttaccctt 500

                                           
Query: 301 tcagagtaggagaaataacctctggagactga 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 tcagagtaggagaaataacctctggagactga 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)