BAC Information

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BAC

Clone NameMSMg01-123P19
Chromosome1 (Build37)
Map Location 73,200,826 - 73,201,079
singlet/doubletsinglet
Overlap genenone
Upstream geneMreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
Downstream genePinc, LOC672208, LOC100043291, Tns1, Rufy4, Il8rb
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123P19.T7 (MSMg01no123_p19.b1)MSMg01-123P19.TJ (MSMg01no123_p19.g1)
ACCAG333456AG333457
length1,2471,235
length of high quality
(start - end)
254 (125 - 378)274 (126 - 399)
definitionCHROMAT_FILE: MSMg01no123_p19.b1 PHD_FILE: MSMg01no123_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:27 2005CHROMAT_FILE: MSMg01no123_p19.g1 PHD_FILE: MSMg01no123_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTACCCNNGGACATTGGCGCTAAGACTCCTAAGGGAGAGGACCGCGGAA
TTCCAAGATTACTTTTACTGACTTAAAATGACCCTGGATGGATAATGAAT
GTTTGCCTCTATTTTCAGAGTATATGGATGGAGGTGGCCAGCAAGATTCA
TAATCCCAGCGAACAGCTTATCCTTTCCAATATTTACCTTTCATTCACTC
TACCAAGGAAGCGATATTTCAGACATATTATATGTGAGACAGCATGAAAG
ATACAAATGTATGTCAGATAAACTGCCCTCAAGCTATTTACAGGGAGGTA
CATAAGAGCAATATTTACATACTCATAAAACAGGCAGGGTGGAGCACATG
CGTGTCTTTGTCCACCTTTCACAGTGTGGTGTGTGCCCACATAAAGTCTC
TTTTACTTTATCAGTTGCAAAAGCACAATTCTAACATAAGCAAAATAGGA
GATATTTTTTTTTTTTCCACCAATTATTTATTACCCCCCCCTACAAAAAA
AAGACTTCACACAATTAGTAAATTTAGTGGCTTTGGATACACTCACATAT
CCACACACACCCACCCACTGAGAGAGAGAGCTAGAGAGAGAGCGAGACAG
AGAGAGACAGACATAGAGACAGCCTAGCCACACATTCTCCCCTCCCTTTC
CTCCCTCCCTCTCCTCTCCCTCTTCTTCCCCTCTTTTCCTTCCCCCCTCC
CCTCTCCCCTCCTTCCTCCCTCCCTCCTCCCCCTCCCTTCCCCCCTTCTC
CTTTCCCTTCCCCCCCTCTCCCACTCATCTCTTTCCCTTCCTCTTCCCCC
TCCACTCCCTTCCCTCTTCTCTCCTCCCCCCTTCCCCCCTTCCCCCTCCC
AATCTCTCTCTCACCCTCCCCCTTCTCTCCCTTCTTCCCTCACCCATACT
TCCCCCCTTACTTCTCCACTCCCCTTCTATTCCCCCCTCTCCACCCTCCC
CTCTCCTCCCTTTCCCCCACCCTATTCTCCCCCTTCCTCTCCCCCTCCCC
CCCCTTCTCCCTCCTTCCTTCCATCTCCTTCTCCTCCCCTACTTCTCTAC
CCCTATCTCTCCCACCCTCTCCTCTTCCCTCTTTCTCTTCCCTCTCCCTT
TTCCTTTCTCCCTCCCCTTTCTCCCTCTCCTCACACTATACTCATCGTCA
CACTCTTTACTCCTTTCCTCTCCCTTCCTCCTCTCTATCCCTTCCTTCCC
TCTCCCTTCATTCCTACACCTCTTCTTCCCTCCCTCTCACTATTCCG
TCCCCCGACGATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCCTTTAAGCTTCCCAAAACTTTTATCATGA
ATGGGTGTTGGATCTTAACAAACGCTTTTTCTGCATCTAACGAGATGATC
ATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGA
TTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGT
CAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATT
TTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTT
CTCTATCATTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGG
CTTTTTAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAACT
AGTTTGTGTCCAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTC
TGCACTAAACCCGCCTGGTCCTGGGCTTTTTTTGGTTGGCAGACTATTAA
TAACTGCTTCTATTTCTTTAGGCGATATGGGACTGTCTATATGGTCAACT
TGATCCTGATTTCACTTTGGTACCTGGCATCTGTCCCAGAATTTATCCAT
TTCTTCCCGGTTCTCCAGTTTTGTTGAGTACCTCCTTTTGTACAATGATC
TGATGGTGTTTTGTCTTTCCTCACGAACTGTTGTCATGTCTCCCTTTTCA
TCTCTCCATTTGACCATTAACATTTTGTCCCTGTGCCCTTTTACCGAGTC
TACGCTACGCCTTTATCTTTCCTTGTTGAATTTTCCCCAAAAACCCCTCT
CCCCCCTTGGCTTACCTCTTTGAACCTAGTTTCTTCTTTGTTTCCTCCTT
GGTTGATTTCCCCCCCCGGAACGTTTATTATTTTTCTGTCCTCCTACTCC
CTCCTCGTATTGAATTTTCCCTCCCCTTTTCCTTCTACCCCCTTTTTTCA
TGTTTTTGTCCAAACCTCCTCTTTGTGGGTCTTCCTCTTCCCCAGTTTCC
CTTCCTTGCCATCGCATCTCTCAAACTTTTCTAATTTCTCTCCCTTCTAT
AAAATGTTCTTTCTTCCTCTGCTCTCTCATAATACTTTTTCTATTTCATC
TGTGTCTTTCTTCTTTTTCCTATTTAACCCTCCTCTTGTAAAGTCTCCTA
CATATTTTCTCTTCTTNCTTTCTCGCACTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_p19.b1 MSMg01no123_p19.b1 CHROMAT_FILE:
MSMg01no123_p19.b1 PHD_FILE: MSMg01no123_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:27 2005
         (254 letters)



>mm_chr1_73200626_73201279
          Length = 654

 Score =  484 bits (250), Expect = e-141
 Identities = 253/254 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggatggaggtggccagcaagattcataatcccagcgaacagcttatcctttccaatatt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggatggaggtggccagtaagattcataatcccagcgaacagcttatcctttccaatatt 260

                                                                       
Query: 61  tacctttcattcactctaccaaggaagcgatatttcagacatattatatgtgagacagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacctttcattcactctaccaaggaagcgatatttcagacatattatatgtgagacagca 320

                                                                       
Query: 121 tgaaagatacaaatgtatgtcagataaactgccctcaagctatttacagggaggtacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaagatacaaatgtatgtcagataaactgccctcaagctatttacagggaggtacata 380

                                                                       
Query: 181 agagcaatatttacatactcataaaacaggcagggtggagcacatgcgtgtctttgtcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagcaatatttacatactcataaaacaggcagggtggagcacatgcgtgtctttgtcca 440

                         
Query: 241 cctttcacagtgtg 254
           ||||||||||||||
Sbjct: 441 cctttcacagtgtg 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)