BAC Information

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BAC

Clone NameMSMg01-124B05
Chromosome1 (Build37)
Map Location 115,391,587 - 115,392,154
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124B05.T7 (MSMg01no124_b05.b1)MSMg01-124B05.TJ (MSMg01no124_b05.g1)
ACCAG333521AG333522
length1,2291,274
length of high quality
(start - end)
568 (117 - 684)269 (126 - 394)
definitionCHROMAT_FILE: MSMg01no124_b05.b1 PHD_FILE: MSMg01no124_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:40 2005CHROMAT_FILE: MSMg01no124_b05.g1 PHD_FILE: MSMg01no124_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCTTGGAC
ATTAACATACCCTTATAGAGGTTACTAAGTTCTGAGGNTGTTCTTAAATA
GCCCCTTAAGAACTTTAATAATGTTTAAGGGATTGGTCATTCAAATAAAG
GTATAAATCAACATACTTTTTCAGTACCCGGGTAGGCACACTAGATAGAT
GGGTTACAGCAAAAGAGAAATCTCTGATATAGGTTTCAGACACTGTCTTG
TAGAATTCTGAGCTTTTGCATTGGTTCACACTAAAGGGTTTTTATCTGAT
CTAAAAAAATTACATAATAATCACGACAGGTCACAGAAAAAGGTATAGAA
CAAATAGATGTTGGGCTAAAGATAATCCAATATAACTTGGAATATGTATC
TGGGCCTTAAGCATTCCAACCTCTAAGCTTTTGTCGGTATAACCTCTGTC
TTTGCTAGGATTTTACTGCTGTGAACAGACACCATGACCAAGGCAACTCT
TGTAAAGAACAACATTTTCGGCCTCTACAACCAACACAACACACAAAGGC
CCTAATTTGACTTAGGACAGAGAGGCCAGTCTTATAAGTCCCACTCAACC
TCATCCTTAGGGAGCCTAAAAAGCACTTAATACCTACATGGTCATTACTT
ATCTCTGAGATGCCCCTCCCCAAGCTTCCACAGAGACTAGTTAAAGTAAG
TGCCCCAAAGTGAGACACAGGAGTCTTGTTCAATTCTATTGCGCCCAGGA
GTTCCTCAGAAGATGTTTGTCATAAGAATGTGTCTTAGGGAAACCCTTAG
GAAATATTTTCTTTATTTCAAATTTGCTAAGGGAAAGGGCTATCCTTGGA
CAGGAAAACTGAAGGTTTTGTTTTGGACTGCAAATATTGAAGCTTGTAAG
GAATATTGGTTGAACCCAGTTTTATCACAGCAGGCTTAGGGCTTCCTTTT
CTTTTCAGTGTAATTGGAACAGTTAATCCTGCTACATTCTAAAAGTGATC
TTTGTTTGAAAAATAAACTTCCATGGACATCTTATCCCTGGGGCTTTAAG
GGCTTGAAGTTCCTGGGTAACTAATTCCCAGGGAAGACTCCAAATAAGTT
TTCAATTCACTTTTTAAACCCCAAACTGGTCCTAGAAAACAAATTTTACC
GTCTACACATCACCTCGGGGATTGGGTAACCTTATTTGAATTTTTATTGT
GTAACTCTCACTGGGACTACTGGTAAGTG
NTTCCAAACATGTGAGCCTGGGGCGCCTGTXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCACCTTTAAAAGAGGAGGAACCAGGAGACAAGAAC
TGATGAAGCACCTTTAAGAAATAATGCTATTTGATGGCTTGCTCAGTCTA
CTTTCTTTTCTTTTCTCTTTTCTTTTTTAAATTTTCCTTTTAAAAAAATG
TTTTATTGGCTACTTTCTTTATTTACATTTCAAATGTTATACCCCTTTCC
TGGTAACACCTCAAAATCCCCTATCCCATCCTCTCTGACCTACTTCTATG
AGGGTGTTCTCTCACCCACCAACCCACCTCTGCCTCCCCGCCCTTGAATT
ACCCTACACTGGGGAACAAAATACACATAGGAGCAAATGCTGAGACAATG
TTTTTAGCAGAGACTGAAAGAAAGGCCATCCAATGGACCTGGAGGGTCCT
TTTTTTTTTTCCCCCCCCACAAAGGAACTCATACAAAAAAAAAAACAGGA
TAATTGTATATTAGCCCAGATACTTAGGATACCCAAGATATAAGATACAA
TTTGCTAAATGCATGAAACTCAATAAGAATGAAGACCAAAGTGTGGACAC
TTTGCCCCTTCTTATAATTGGGGATAAAACACCCATGTAAGGAGTTACCG
ATACAAAGTTTGTAGCTGTGATGAAAGGATGGACCATCTAGAGACTGCCA
TATCCGGGGATCCATTCCATATTCAGTTTCCAAACGCTGACACCATTGTA
CACTCTTCCAAAAATTTTTTGTTGAATGGACCTATAAAATAGCCTTTTTC
TTGTGAAACTATCGCTGGGCATCTATTAAAACACAATTAATGAATGCTCC
CATTTTTTTTCTTGTAATTTATTATAATGTCCCCTAATGTTTTTATCTAA
AAAAAATATCTCATGCTCTTAATTGCTTCCTCACCCCTTATTTCTGTAAC
ATACTTTTTGTAAATTACCTAGTATCCCTTCAATTTCTTTACTTTCTCCT
GGCTTTTGGATTCTAAAAATTGGTTCTAATCTTACTCCTCTATTTTTAAA
CAAAATACCTATTTGAAATTTGCAACACTTTTTTATTCCTCCATCTATAT
GTTCTATTCGCCTCGATTCTAATAATTTTTCTTATCTTATTTTCTTATTG
CATTCTTCTTTTCATACTTCTCCTCTTTTATTTATTATTAATATACATTT
ATATACATTTCATACTACTTATCTTTCATTACTATACATTCCTATAGTAA
TCTATATATTTATCTTTCCTATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_b05.b1 MSMg01no124_b05.b1 CHROMAT_FILE:
MSMg01no124_b05.b1 PHD_FILE: MSMg01no124_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:40 2005
         (568 letters)



>mm_chr1_115391387_115392354
          Length = 968

 Score = 1036 bits (536), Expect = 0.0
 Identities = 560/568 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataatgtttaagggattggtcattcaaataaaggtataaatcaacatactttttcagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataatgtttaagggattggtcattcaaataaaggtataaatcaacatactttttcagta 260

                                                                       
Query: 61  cccgggtaggcacactagatagatgggttacagcaaaagagaaatctctgatataggttt 120
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaggtaggcacactagatagatgggttacagcaaaagagaaatctctgatataggttt 320

                                                                       
Query: 121 cagacactgtcttgtagaattctgagcttttgcattggttcacactaaagggtttttatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagacactgtcttgtagaattctgagcttttgcattggttcacactaaagggtttttatc 380

                                                                       
Query: 181 tgatctaaaaaaattacataataatcacgacaggtcacagaaaaaggtatagaacaaata 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatctaaaaaatttacataataatcacgacaggtcacagaaaaaggtatagaacaaata 440

                                                                       
Query: 241 gatgttgggctaaagataatccaatataacttggaatatgtatctgggccttaagcattc 300
           |||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct: 441 gatgttgggctaaagataatccaatataacttggaagatggatctgggccttcagcattc 500

                                                                       
Query: 301 caacctctaagcttttgtcggtataacctctgtctttgctaggattttactgctgtgaac 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 caacctctaagcttttgtcggtataacctctgtctttgttaggattttactgctgtgaac 560

                                                                       
Query: 361 agacaccatgaccaaggcaactcttgtaaagaacaacattttcggcctctacaaccaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agacaccatgaccaaggcaactcttgtaaagaacaacattttcggcctctacaaccaaca 620

                                                                       
Query: 421 caacacacaaaggccctaatttgacttaggacagagaggccagtcttataagtcccactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caacacacaaaggccctaatttgacttaggacagagaggccagtcttataagtcccactc 680

                                                                       
Query: 481 aacctcatccttagggagcctaaaaagcacttaatacctacatggtcattacttatctct 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacctcatcattagggagcctaaaaagcacttaatacctacatggtcattacttatctct 740

                                       
Query: 541 gagatgcccctccccaagcttccacaga 568
           ||||||||||||||||||||||||||||
Sbjct: 741 gagatgcccctccccaagcttccacaga 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)