MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-124K05
Chromosome	1 (Build37)
Map Location	93,089,065 - 93,221,196
singlet/doublet	doublet
Overlap gene	Ramp1, Ube2f, LOC665783, Scly, Espnl
Upstream gene	Cxcr7, Cops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766
Downstream gene	Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
Link	Open Mouse BAC browser

Click to get alignment info.

name	Cxcr7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12778 MGI:109562
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cops8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108679 MGI:1915363
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Col6a3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12835 MGI:88461
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 156 ESTs, 5 Proteins

name	Mlph (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171531 MGI:2176380
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prlh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:623503 MGI:3644668
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Rab17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19329 MGI:104640
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lrrfip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16978 MGI:1342770
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm817 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329207 MGI:2685663
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665766 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665766
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 12 Proteins pseudo : _no_value

name	Ramp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:51801 MGI:1858418
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ube2f (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67921 MGI:1915171
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665783 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665783
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 17 ESTs, 2 Proteins pseudo : _no_value

name	Scly (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50880 MGI:1355310
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Espnl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227357 MGI:2685402
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Klhl30 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70788 MGI:1918038
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC056923 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227358 MGI:3606476
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ilkap (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67444 MGI:1914694
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700020N18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67086 MGI:1914336
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Hes6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:55927 MGI:1859852
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Per2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18627 MGI:1195265
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Traf3ip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74019 MGI:1921269
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Asb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:65247 MGI:1929735
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Twist2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13345 MGI:104685
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hdac4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208727 MGI:3036234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cxcr7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357310 GeneID:12778 MGI:109562
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-X-C motif) receptor 7 transcript_id : NM_007722.3

name	Cops8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114158690 GeneID:108679 MGI:1915363
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana) transcript_id : NM_133805.3

name	Col6a3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363815 GeneID:12835 MGI:88461
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 156 ESTs, 5 Proteins product : procollagen, type VI, alpha 3, transcript variant 2 transcript_id : XM_897036.2

name	Mlph (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87080830 GeneID:171531 MGI:2176380
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : melanophilin transcript_id : NM_053015.2

name	Prlh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82880987 GeneID:623503 MGI:3644668
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : prolactin releasing hormone transcript_id : XM_887970.1

name	Rab17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386732 GeneID:19329 MGI:104640
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB17, member RAS oncogene family transcript_id : NM_008998.3

name	Lrrfip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803260 GeneID:16978 MGI:1342770
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat (in FLII) interacting protein 1 transcript_id : NM_008515.2

name	Gm817 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351760 GeneID:329207 MGI:2685663
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 817, (NCBI) transcript_id : NM_001033408.2

name	Ramp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625604 GeneID:51801 MGI:1858418
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : receptor (calcitonin) activity modifying protein 1 transcript_id : NM_016894.2

name	Ube2f (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982648 GeneID:67921 MGI:1915171
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-conjugating enzyme E2F (putative) transcript_id : NM_026454.2

name	Scly (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111074526 GeneID:50880 MGI:1355310
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : selenocysteine lyase transcript_id : NM_016717.3

name	Espnl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386086 GeneID:227357 MGI:2685402
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : espin-like transcript_id : NM_001033292.2

name	Klhl30 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802195 GeneID:70788 MGI:1918038
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kelch-like 30 (Drosophila) transcript_id : NM_027551.2

name	BC056923 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124248543 GeneID:227358 MGI:3606476
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC056923 transcript_id : NM_173395.2

name	Ilkap (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129850 GeneID:67444 MGI:1914694
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : integrin-linked kinase-associated serine/threonine phosphatase 2C transcript_id : NM_023343.2

name	1700020N18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363817 GeneID:67086 MGI:1914336
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA 1700020N18 gene transcript_id : XM_979611.1

name	Hes6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369243 GeneID:55927 MGI:1859852
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hairy and enhancer of split 6 (Drosophila) transcript_id : NM_019479.3

name	Per2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142350522 GeneID:18627 MGI:1195265
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : period homolog 2 (Drosophila) transcript_id : NM_011066.2

name	Traf3ip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:63147417 GeneID:74019 MGI:1921269
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TNF receptor-associated factor 3 interacting protein 1 transcript_id : NM_028718.1

name	Asb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:103472023 GeneID:65247 MGI:1929735
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and SOCS box-containing protein 1 transcript_id : NM_001039126.2

name	Asb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:103472020 GeneID:65247 MGI:1929735
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and SOCS box-containing protein 1 transcript_id : NM_023046.4

name	Twist2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131151 GeneID:13345 MGI:104685
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : twist homolog 2 (Drosophila) transcript_id : NM_007855.2

name	Hdac4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46402200 GeneID:208727 MGI:3036234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histone deacetylase 4 transcript_id : NM_207225.1

name	Cxcr7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560715 CCDS:CCDS15152.1 GeneID:12778 MGI:109562
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004950 - chemokine receptor activity [Evidence IEA]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006952 - defense response [Evidence IEA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : chemokine orphan receptor 1 protein_id : NP_031748.2

name	Cops8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114158691 CCDS:CCDS15153.1 GeneID:108679 MGI:1915363
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0008180 - signalosome complex [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 product : COP9 signalosome subunit 8 protein_id : NP_598566.3

name	Col6a3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94363816 GeneID:12835 MGI:88461
definition	codon_start : 1 exception : unclassified translation discrepancy note : overriding stop codons product : similar to collagen, type VI, alpha 3, isoform 2 protein_id : XP_902129.2 transl_except : (pos:complement(92672244..92672246),aa:OTHER) transl_except : (pos:complement(92672187..92672189),aa:OTHER) transl_except : (pos:complement(92670168..92670170),aa:OTHER) transl_except : (pos:complement(92670138..92670140),aa:OTHER) transl_except : (pos:complement(92670069..92670071),aa:OTHER) transl_except : (pos:complement(92669557..92669559),aa:OTHER) transl_except : (pos:complement(92664995..92664997),aa:OTHER) transl_except : (pos:complement(92664175..92664177),aa:OTHER)

name	Mlph (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87080831 CCDS:CCDS15155.1 GeneID:171531 MGI:2176380
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence IDA]; GO:0042470 - melanosome [Evidence TAS] GO_function : GO:0003779 - actin binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0017022 - myosin binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0017137 - Rab GTPase binding [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0030318 - melanocyte differentiation [Evidence IMP] codon_start : 1 note : leaden product : melanophilin protein_id : NP_443748.2

name	Prlh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82880988 GeneID:623503 MGI:3644668
definition	codon_start : 1 product : similar to preproprolactin-releasing peptide protein_id : XP_893063.1

name	Rab17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679585 CCDS:CCDS15156.1 GeneID:19329 MGI:104640
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : RAB17, member RAS oncogene family protein_id : NP_033024.1

name	Lrrfip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678722 GeneID:16978 MGI:1342770
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : FLAP (FLI LRR associated protein) product : leucine rich repeat (in FLII) interacting protein 1 protein_id : NP_032541.1

name	Gm817 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701905 CCDS:CCDS15157.1 GeneID:329207 MGI:2685663
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC329207 protein_id : NP_001028580.1

name	Ramp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8394145 CCDS:CCDS15158.1 GeneID:51801 MGI:1858418
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015027 - coreceptor, soluble ligand activity [Evidence IDA]; GO:0008565 - protein transporter activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IPI]; GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0008277 - regulation of G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : receptor-activity modifying protein 1 protein_id : NP_058590.1

name	Ube2f (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385948 GeneID:67921 MGI:1915171
definition	GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] codon_start : 1 product : NEDD8-conjugating enzyme protein_id : NP_080730.1

name	Scly (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27804323 CCDS:CCDS15159.1 GeneID:50880 MGI:1355310
definition	EC_number : 4.4.1.16 GO_function : GO:0016829 - lyase activity [Evidence IEA]; GO:0009000 - selenocysteine lyase activity [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : selenocysteine reductase product : selenocysteine lyase protein_id : NP_057926.2

name	Espnl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701794 CCDS:CCDS15160.1 GeneID:227357 MGI:2685402
definition	codon_start : 1 product : espin-like protein_id : NP_001028464.1

name	Klhl30 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037217 CCDS:CCDS15161.1 GeneID:70788 MGI:1918038
definition	codon_start : 1 product : kelch-like 30 protein_id : NP_081827.1

name	BC056923 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124248544 GeneID:227358 MGI:3606476
definition	codon_start : 1 product : hypothetical protein LOC227358 protein_id : NP_775571.2

name	Ilkap (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930415 CCDS:CCDS15162.1 GeneID:67444 MGI:1914694
definition	GO_component : GO:0008287 - protein serine/threonine phosphatase complex [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA] GO_process : GO:0007229 - integrin-mediated signaling pathway [Evidence IEA]; GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] codon_start : 1 product : integrin-linked kinase-associated serine/threonine phosphatase 2C protein_id : NP_075832.1

name	1700020N18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94363818 GeneID:67086 MGI:1914336
definition	codon_start : 1 product : hypothetical protein LOC67086 protein_id : XP_984705.1

name	Hes6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506777 CCDS:CCDS15163.1 GeneID:55927 MGI:1859852
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003712 - transcription cofactor activity [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA] [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : hairy and enhancer of split 6 protein_id : NP_062352.1

name	Per2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755028 GeneID:18627 MGI:1195265
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IPI] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0000155 - two-component sensor activity [Evidence IEA] GO_process : GO:0007623 - circadian rhythm [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0048511 - rhythmic process [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0000160 - two-component signal transduction system (phosphorelay) [Evidence IEA] codon_start : 1 exception : mismatches in translation note : period 2 product : period homolog 2 protein_id : NP_035196.1

name	Traf3ip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63147418 GeneID:74019 MGI:1921269
definition	GO_component : GO:0005829 - cytosol [Evidence ISS]; GO:0015630 - microtubule cytoskeleton [Evidence ISS] GO_function : GO:0008017 - microtubule binding [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS]; GO:0005102 - receptor binding [Evidence ISS]; GO:0015631 - tubulin binding [Evidence ISS] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence ISS]; GO:0042527 - negative regulation of tyrosine phosphorylation of Stat6 protein [Evidence ISS]; GO:0051101 - regulation of DNA binding [Evidence ISS] codon_start : 1 note : microtubule-interacting protein that associates with TRAF3 product : TNF receptor-associated factor 3 interacting protein 1 protein_id : NP_082994.1

name	Asb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85060518 GeneID:65247 MGI:1929735
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_process : GO:0007275 - development [Evidence IEA]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0030539 - male genitalia development [Evidence IMP] codon_start : 1 note : isoform a is encoded by transcript variant 1; ankyrin repeat-containing SOCS box protein 1 product : ankyrin repeat and SOCS box-containing protein 1 isoform a protein_id : NP_001034215.1

name	Asb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85060520 GeneID:65247 MGI:1929735
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_process : GO:0007275 - development [Evidence IEA]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0030539 - male genitalia development [Evidence IMP] codon_start : 1 note : isoform b is encoded by transcript variant 2; ankyrin repeat-containing SOCS box protein 1 product : ankyrin repeat and SOCS box-containing protein 1 isoform b protein_id : NP_075533.3

name	Twist2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681177 CCDS:CCDS15166.1 GeneID:13345 MGI:104685
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IPI] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0045668 - negative regulation of osteoblast differentiation [Evidence ISS]; GO:0045892 - negative regulation of transcription, DNA-dependent [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : dermis expressed 1 product : twist homolog 2 protein_id : NP_031881.1

name	Hdac4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46402201 GeneID:208727 MGI:3036234
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0016564 - transcriptional repressor activity [Evidence IDA] [Evidence IMP] GO_process : GO:0008285 - negative regulation of cell proliferation [Evidence IMP] [Evidence IDA]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0045892 - negative regulation of transcription, DNA-dependent [Evidence IMP] [Evidence IDA]; GO:0001501 - skeletal development [Evidence IMP] codon_start : 1 product : histone deacetylase 4 protein_id : NP_997108.1

name	(CDS detail)
type	STS
link
xref	UniSTS:123807
definition	standard_name : 27.MMHAP97FLA6.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:158826
definition	standard_name : AF000236

name	(CDS detail)
type	STS
link
xref	UniSTS:141360
definition	standard_name : Cmkor1

name	(CDS detail)
type	STS
link
xref	UniSTS:178433
definition	standard_name : AW541270

name	(CDS detail)
type	STS
link
xref	UniSTS:162533
definition	standard_name : RH125786

name	(CDS detail)
type	STS
link
xref	UniSTS:161511
definition	standard_name : RH124689

name	(CDS detail)
type	STS
link
xref	UniSTS:124423
definition	standard_name : RH118243

name	(CDS detail)
type	STS
link
xref	UniSTS:116255
definition	standard_name : D1Mit10

name	(CDS detail)
type	STS
link
xref	UniSTS:158827
definition	standard_name : AF064749

name	(CDS detail)
type	STS
link
xref	UniSTS:178436
definition	standard_name : AI507288

name	(CDS detail)
type	STS
link
xref	UniSTS:178439
definition	standard_name : AI042932

name	(CDS detail)
type	STS
link
xref	UniSTS:122678
definition	standard_name : 01.MMHAP90FLA1.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:273360
definition	standard_name : PMC56945P1

name	(CDS detail)
type	STS
link
xref	UniSTS:142286
definition	standard_name : D1Wsu84e

name	(CDS detail)
type	STS
link
xref	UniSTS:185446
definition	standard_name : AW413472

name	(CDS detail)
type	STS
link
xref	UniSTS:234172
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:158828
definition	standard_name : AU024550

name	(CDS detail)
type	STS
link
xref	UniSTS:213048
definition	standard_name : RH129755

name	(CDS detail)
type	STS
link
xref	UniSTS:180660
definition	standard_name : AW413925

name	(CDS detail)
type	STS
link
xref	UniSTS:234173
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:158829
definition	standard_name : AI326895

name	(CDS detail)
type	STS
link
xref	UniSTS:164122
definition	standard_name : AI326893

name	(CDS detail)
type	STS
link
xref	UniSTS:270459
definition	standard_name : PMC124275P1

name	(CDS detail)
type	STS
link
xref	UniSTS:158830
definition	standard_name : AU041749

name	(CDS detail)
type	STS
link
xref	UniSTS:178440
definition	standard_name : AI851378

name	(CDS detail)
type	STS
link
xref	UniSTS:178434
definition	standard_name : AI426616

name	(CDS detail)
type	STS
link
xref	UniSTS:161241
definition	standard_name : RH124419

name	(CDS detail)
type	STS
link
xref	UniSTS:125733
definition	standard_name : U36384

name	(CDS detail)
type	STS
link
xref	UniSTS:128942
definition	standard_name : D1Mit84

name	(CDS detail)
type	STS
link
xref	UniSTS:234175
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234174
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234176
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128724
definition	standard_name : D1Mit365

name	LOC665766 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149234221 GeneID:665766
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 12 Proteins product : similar to proteasome activator rPA28 subunit alpha pseudo : _no_value transcript_id : XR_032623.1

name	LOC665783 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149234222 GeneID:665783
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 17 ESTs, 2 Proteins product : similar to Zinc finger protein 330 pseudo : _no_value transcript_id : XR_032669.1

clone name	MSMg01-540O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494K02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-174K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-202I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343B01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-299N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294O24
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-124K05.T7 (MSMg01no124_k05.b1)	MSMg01-124K05.TJ (MSMg01no124_k05.g1)
ACC	AG333940	AG333941
length	1,304	1,309
length of high quality (start - end)	527 (86 - 612)	274 (129 - 402)
definition	CHROMAT_FILE: MSMg01no124_k05.b1 PHD_FILE: MSMg01no124_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:00 2005	CHROMAT_FILE: MSMg01no124_k05.g1 PHD_FILE: MSMg01no124_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:00 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(93,220,670 - 93,221,196)	(93,089,065 - 93,089,338)
sequence	CTTCGCTTNNACATTTGCGCCTAXXXXXXXXXXXXXXXXXXXXXXXCGCG GAATTCTGTGGAGACAGAATCACCCCTTTAGTCCTAAGGGTCCCCTCTGC CTCTGTATGGCTACCACTGTCTGCTGCTGCCATAGAGCACCTCTTGCCAG ACACAGCTCTATCCAGTGAGCAGAGTCTTCGCTTTGTGCTAGAACCGTGC TCACTGGGACTAGGAGGAGACGGCCTCCCTTAACAGTAAGCCTTGGCTCT TAATTGCTCCTGGCTCAAGACATGTTTGTCTTCTAGGTCTCTGACTGTGC CTTGGCCTTGTCTCATCTCTGGGGCCCTTGATGAGCAGGGTGCCACCCAC CTAGGCAGGGGAGGCAGGAGAGTAATGGCAGCTTCCACAAACACCCTGCA ACTCACTGAGTGACTTTGGATCCACCCCAGAGGGGGTCTTCTATTTCATC ATGGAGAGGCAATTACAAGCTTCAACCGCCAGAAGGGGAAACTGAGGCTG GGAGATGAATGATTTCCTCAGGGGGCAAGGGTTTGGGTTTCTTCCCTTAC AAAGCTCGTCTGGCCACCTTGTTCTAGCAAGGTGAGCTTTGTATAGGGCT CAGACCAGAACACAGCAAAGGAGGAAAGAAAAAAAAATTGGAAACTGCTT GTTTGCTTGTCTTCCCTTATCCACAGACCCTAGAGGGTGCGGCACAAGGC TTTGGTTTTGAATAGGCCTTGGTCCAGTCAAGGGATCCCCACTGTGTAAT ATGAACCCAGTCCAGCATGCTGAACGTGGTTGCTTTTCCTGACCACCTTG TATGCAACTCTTGCAGGCTCCTCCCCCTTCAACCTGTACAAGCTGCACCT ATGTTATAGGCCCTTCCCTGACCCACGCCTAAACTTTGCTCCCATACTTT TCTGACCCCTGCTTATTCCTCCGCCTCTGTTACCCCCAGGCCCTGTCCTC CAAGGCCACCCAGCATGCTCTTCCCGTGGCTTCCCCTTCTGTAAACGCCC CTCCCCCCTCTCCTTTGGCTCTTTCCCTGTTGGTTAAGTTCCTTGGGAAC CTCCCCTGCTGTTGCCCCCCTTGTTCAGAATTTTCTAAAAACGTCCTAAA TCCCCCTTTTACAACATTTTGGGTTCTATGGGTATAAGGCTCCTTTTCAC CGTTTTTTCCTGTGTGTGGCCTGCTTGGCCTCTTCTCTGCAATAATCCTC CTCCTCACCCGTGGCTCCGGTGGGCTCCAACCCTCTGTTCTCTCTCTTTT CATCTCTCTACAACTACCTTGAAGATCATTTTTTGGCTCCTTACCTCGAT GAAA	GCATTTTTTTNTCACAAGCGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXCCCCTGAAGTTATGCACAGCCGAGGG GCACGCCTGTCCTGACCTTTTGATGACAGAGCAGCATTGTCTCCGTCTAG GTTTCAGAGGCAGCAGTCCCCAGTGGTTACATTTGCCTGCCCATAGAGTC GGCCTTTTGACTCCAAAGCTTAAAGTTTGAGGCAGTTTTACTGTTTGTTG TTGCTTGTTCTTTATGAGAGATTAGGATGCTCTTCCAATTACAAAATGAA ACTACTCTCTGCCTGCGGAGCTGCCCGTGGCCCCAATCCACACTCTCCAA GGCAGGAAGGGATGAGTTTATGAGTCTAGCAGAAGAAAGATGGGGCTGAG CATAGCATGTCTCCCCCTTGGGAGGTGGAGGGGTGATCTGAGAAGAATGG GAGGTACATTTTTTTTTCCCCCCAGGGTAAGCTCTACAGCTAGACCAGAG AGGAGGGGAGACTATCCAGGAGATTTTTGTCTTGGCAGAATGCTGGGGGT GGCTTGTGGTTAAGTATTCTCCTGCATTTGTGTAGGTGCACATGATTGGT CCTTTTGGTCCTTCATTTTCCTTATGCCCTTTTCTGCTGGGCATCATTTT CTCCTCACAGCTATCTTACTTTTCCCTGTGTTTTACTTCTTTCTGTATTG TACGTATTTCCTCTTTTCTTCTCTGTTCCTTTCCTTTGATTTTCACTTTT CTCCCTATTTCCTTTATTTGTTCTTTTGTTGCCTTCTTCCCTCCCTCTTC TTTCTATCCTTTTTTGTTTTCCACATTTTTTTCTCCATCCTTCTTCCTTT TCTGCCCCTCTTTCTGTCTTTTTTTTTTTCATTTTTCTAAGCCCCTCTTT TATTTTTGTACTTCCTTTCTTTTCTTTGTTTTTTTTCTCCTTATTTTTTA TTCTCACCTTCTCATTCTTTTTCTTTTTTTTTCCTTTTGTCTTTTTCTCT CTCCTTTTTTTTCATCCTCCTTCAATCTCTTTTCTCTTCTAATTTTAGTT CTCTCTTTCTCTACCTTTTCCTTTTTTTTCTTCCATTTCTCTTCTCCTTT CCCCTTCATCTTTTCTTACTTCTTATCTCCCTTTTCTCTCTCTTCTTTCT TGTCAACCTTCTGTCTTTCTCTCTTTCTTGCTTTATATATTCTCTCATAT TTCTCATCTTTTCTATTCCTTCTTCTCTATTCTTCAATTTATTCCTATTC TCTACATCATCTCATTTCTCTCATCTTTATCATTTTTCATTATTTCTTCT TCTCTCTCT
quality values	Open. Hide. 9 9 9 9 8 8 8 3 0 0 3 6 7 7 9 7 6 8 8 8 8 15 8 8 8 12 14 19 10 10 10 15 12 14 19 19 35 30 28 28 28 28 26 28 37 37 37 37 37 37 32 29 30 37 39 33 25 26 28 28 28 31 33 41 33 33 33 33 29 23 23 11 11 12 10 14 9 8 10 8 8 8 12 12 18 16 16 25 34 44 53 47 50 50 53 38 36 36 36 36 38 38 36 36 31 31 31 33 33 25 19 19 10 9 11 11 9 14 21 18 25 33 33 33 33 33 33 36 38 50 53 53 53 50 50 48 57 57 57 57 57 57 53 50 50 50 57 57 57 48 48 48 59 57 57 57 57 47 47 47 50 48 48 41 41 41 48 50 50 57 59 57 57 57 57 57 57 57 57 47 47 47 57 57 57 48 48 47 57 57 57 57 57 59 57 57 57 57 57 57 57 57 57 57 57 50 48 48 48 57 57 57 57 57 59 54 54 54 59 59 59 52 52 52 52 57 57 57 57 57 57 54 54 57 57 68 68 68 68 68 59 59 57 57 54 57 57 52 57 57 57 57 57 57 57 57 68 68 68 57 57 57 57 57 57 57 52 52 57 59 59 57 57 68 68 68 68 59 59 57 59 57 57 57 57 57 57 59 57 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 52 52 52 62 62 62 62 62 62 62 62 52 62 52 52 52 62 62 62 45 45 45 43 43 45 43 43 35 43 43 52 52 62 43 45 45 52 62 62 62 62 62 62 52 52 62 52 52 62 62 62 52 62 52 52 52 62 62 62 62 68 68 62 62 62 62 43 43 39 28 23 23 15 39 13 17 29 39 44 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 43 52 52 43 43 43 43 52 62 62 62 62 62 62 62 52 52 52 43 43 43 43 39 62 43 44 44 52 52 52 62 62 62 39 39 39 43 43 62 62 62 62 43 44 43 45 43 43 43 62 43 43 39 39 39 39 39 62 62 62 62 62 52 52 52 44 43 43 31 31 35 43 43 62 62 52 52 52 57 57 57 57 52 52 43 44 43 39 43 43 43 39 43 43 52 52 52 52 52 52 52 57 57 52 52 52 57 57 57 59 57 52 52 52 57 43 57 52 52 52 57 57 57 57 57 52 52 52 57 52 52 43 43 35 35 43 50 50 52 54 57 57 57 57 52 52 43 43 42 35 35 43 43 43 43 43 50 43 37 37 44 43 42 42 41 43 43 32 34 14 14 14 34 32 29 19 24 18 18 27 27 22 20 20 20 20 20 24 28 24 28 28 42 37 43 43 39 39 43 37 37 37 37 37 39 37 44 37 43 29 30 26 29 23 28 41 39 39 33 39 43 47 47 48 47 43 48 57 48 57 48 50 48 48 48 48 48 47 47 43 43 39 36 36 39 39 39 28 25 13 11 11 19 19 24 33 33 24 28 24 24 24 28 16 14 14 16 16 25 24 37 30 30 28 28 30 28 24 19 15 23 10 10 10 13 17 16 16 10 10 10 13 13 11 13 15 17 19 14 13 9 9 9 9 13 15 16 12 9 9 9 11 11 12 15 17 12 14 15 24 21 18 25 28 20 17 10 10 10 8 10 8 8 8 13 13 21 19 23 11 8 8 8 8 10 14 17 21 23 28 28 39 33 25 17 11 11 10 19 15 13 10 10 11 12 10 13 9 8 8 8 8 8 8 9 14 12 17 27 28 25 21 13 12 10 10 10 15 16 18 16 11 11 11 22 19 10 8 8 8 8 12 12 12 8 8 8 8 8 11 11 16 22 10 11 9 13 10 10 12 12 10 10 10 11 11 18 18 18 21 12 12 11 19 19 17 12 14 16 19 13 8 8 10 10 8 8 8 6 6 6 9 8 8 8 8 8 8 8 15 9 11 10 13 13 16 20 17 18 14 11 13 9 9 15 16 13 16 14 11 13 10 9 9 8 8 8 7 7 6 8 8 15 12 18 15 15 8 8 8 10 15 10 10 10 8 8 8 8 8 10 9 10 8 8 8 8 8 8 15 13 8 8 8 10 10 10 10 9 9 9 9 9 9 8 8 8 8 8 8 9 9 12 9 9 9 9 9 11 17 19 21 16 11 12 14 13 13 8 10 9 9 12 10 10 10 10 13 11 14 14 12 12 10 9 10 9 9 9 14 9 12 11 12 11 9 10 10 8 8 8 8 8 12 12 17 8 8 8 8 8 8 11 13 11 11 11 8 8 6 6 8 6 9 10 10 8 8 10 11 11 8 8 8 10 8 8 8 12 8 10 10 10 10 18 12 14 9 8 10 7 6 10 8 11 8 10 12 9 10 8 8 8 8 8 8 6 6 6 6 10 8 9 9 12 11 11 10 10 10 19 21 13 12 9 10 9 10 10 10 10 10 10 11 12 11 11 11 11 9 9 9 9 9 9 10 9 9 9 8 8 6 7 6 6 9 9 10 10 9 8 8 8 8 7 10 7 6 8 6 8 8 10 10 10 10 10 9 8 10 10 10 10 10 9 9 8 8 8 8 8 8 8 8 8 6 8 6 7 10 10 10 8 8 6 8 8 6 8 10 8 8 8 8 8 8 19 10 8 8 10 9 10 6 6 6 6 6 11 10 8 8 8 10 8 8 8 8 8 8 8 8 8 8 11 12 10 10 10 10 10 10 8 8 9 12 9 9 8 8 8 15 12 10 11 10 11 6 6 8 8 6 6 8 8 8 8 8 8 8 8 11 11 8 8 13 8 8 8 6 6 8 8 8 8 8 8 10 8 6 7 7 6 6 8 9 9 6 8 6 6 8 8 10 10 10 8 8 8 8 8 8	Open. Hide. 9 9 9 9 9 9 9 9 9 3 0 3 8 7 7 8 8 9 9 8 10 10 9 9 9 9 14 9 9 10 19 19 8 8 8 8 10 17 19 25 28 28 28 28 28 28 24 22 22 22 28 28 32 37 33 33 33 28 26 33 36 53 48 47 47 41 41 37 37 40 30 22 9 9 9 9 9 11 11 11 11 20 12 14 14 16 19 21 24 30 37 44 43 37 36 39 39 47 53 50 50 57 48 48 36 36 31 31 28 30 28 25 29 23 18 14 13 13 13 11 11 11 11 16 15 10 10 10 10 12 30 28 59 43 48 48 42 43 43 42 42 43 47 47 50 43 43 43 47 43 43 48 48 48 48 48 43 43 43 43 43 43 43 39 37 37 37 37 43 57 43 43 43 43 34 34 39 39 39 48 48 48 48 48 46 39 39 32 34 25 25 13 12 12 22 25 37 37 37 32 37 30 32 32 39 39 48 57 48 48 48 44 44 53 57 57 48 48 48 48 48 54 54 54 54 59 59 59 59 48 48 46 46 43 43 43 48 57 57 57 54 54 57 57 57 57 57 57 57 57 57 57 48 48 44 57 42 42 35 39 39 57 46 54 57 57 44 44 43 47 46 57 57 43 43 50 59 57 54 50 50 47 47 43 44 43 43 43 52 52 52 38 36 20 28 32 44 44 57 57 57 57 52 52 52 52 52 52 43 43 50 37 43 52 47 47 50 50 54 54 54 57 57 44 43 43 43 43 37 35 33 36 36 33 33 42 42 42 33 33 42 42 43 42 47 42 41 30 42 32 42 30 28 28 33 27 38 30 30 31 37 39 39 39 37 39 31 41 28 30 24 34 22 30 30 32 36 42 28 42 30 28 24 24 23 25 33 33 43 43 39 39 35 35 35 39 31 32 23 20 20 23 28 16 13 11 9 11 11 11 11 11 18 15 24 32 34 34 34 23 23 23 23 31 23 25 30 30 30 34 25 25 33 33 39 43 43 43 43 43 37 39 32 32 30 30 29 30 21 14 12 15 19 18 19 19 12 11 11 12 15 18 21 21 15 10 10 10 10 17 15 16 11 11 11 12 20 24 34 32 23 23 23 25 23 12 11 11 11 12 12 16 12 14 15 15 16 11 11 11 12 13 9 9 9 9 9 11 13 14 21 24 32 37 18 18 11 11 11 15 12 14 14 24 28 39 37 39 29 29 25 21 21 12 12 17 18 16 16 24 21 28 28 28 21 14 14 14 18 21 10 10 10 8 8 10 11 8 8 8 8 10 8 9 11 11 18 22 28 28 17 12 8 8 8 8 8 8 8 10 10 9 9 9 8 8 6 6 8 8 8 10 15 12 12 12 18 11 11 12 11 11 10 9 9 8 8 8 8 10 10 10 9 9 10 10 9 9 15 14 14 14 12 14 12 12 9 9 10 15 9 11 9 14 15 11 10 12 10 10 11 10 11 12 21 18 12 13 13 15 19 12 13 10 10 9 9 10 9 8 9 9 9 8 8 9 9 9 12 10 10 10 9 9 10 11 11 11 10 10 12 8 8 8 8 8 9 13 10 10 10 10 8 8 8 8 10 8 9 7 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 11 8 11 11 8 8 8 13 13 13 15 14 10 8 8 8 7 7 8 8 10 10 10 10 10 9 9 9 9 9 10 10 13 18 19 15 11 11 9 9 8 8 8 8 8 8 10 8 9 10 10 10 10 10 11 10 10 10 12 8 12 8 8 8 10 10 12 12 11 12 12 11 10 10 10 10 10 10 10 10 8 8 6 6 8 8 11 11 13 10 11 11 13 13 10 10 15 9 10 10 10 10 9 8 8 8 8 8 8 10 8 10 10 10 8 8 8 8 8 8 6 6 8 10 10 10 8 8 10 9 10 10 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 10 8 8 8 8 13 13 11 12 10 10 10 12 8 13 16 13 13 11 10 8 8 8 8 11 9 11 11 11 11 8 8 7 9 11 12 10 11 11 8 8 8 8 10 10 12 13 10 10 8 8 12 11 9 14 12 10 10 14 12 9 9 9 11 11 10 10 8 8 8 8 8 8 8 8 10 10 10 9 10 10 9 9 9 9 14 10 9 9 9 10 10 11 15 12 12 11 11 12 13 10 8 6 6 8 8 8 8 12 9 9 8 8 8 6 7 8 8 8 12 8 8 12 11 10 10 8 9 8 8 8 8 10 8 12 10 8 8 8 8 8 8 6 6 8 8 9 22 14 10 8 8 8 8 8 8 11 12 9 8 8 8 8 8 9 9 9 9 8 8 11 10 16 8 12 10 8 8 6 6 8 8 8 11 10 11 10 8 8 10 11 10 11 8 8 10 8 9 9 9 11 10 10 10 10 10 12 10 15 13 13 12 8 10 8 8 8 8 8 8 8 8 8 10 16 11 11 11 11 9 8 8 8 8 8 8 8 8 10 8 8 8 10 8 8 10 13 13 18 12 10 8 8 7 6 8 10 10 10 8 10 13 16 17 10 8 8 6 6 8 8 9 11 11 11 10 11 11 18 18 22 10 8 8 8 8 8 12 10 10 8 8 8 8 8 8 12 9 10 10 11 9 8 8 10 8 8 8 8 8 6 6 8 8 10 9 8 8 8 8 8 8 8 8 8 8 10 8 8 8 10 8 8 10 8 11 13 13 13 10 10 8 8 8 10 8 8 8 7 6 8 8 8 10 8 8 10 10 8 8 8 8 8 8 8 10 6 6 8 8 10 8 8 8 10 10 9 9 10 12 12 7 7 8 8 11 8 8 7 7 10 8 8 6 6 6 6 8 8 9 10 11 18 13 17 18 16 16 12 14 10 11 10 10 8 12 12 9 9 7 8 8 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no124_k05.b1 MSMg01no124_k05.b1 CHROMAT_FILE:
MSMg01no124_k05.b1 PHD_FILE: MSMg01no124_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:00 2005
         (527 letters)



>mm_chr1_93220470_93221396
          Length = 927

 Score =  957 bits (495), Expect = 0.0
 Identities = 519/527 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggtcccctctgcctctgtatggctaccactgtctgctgctgccatagagcacctctt 60
           |||||||||||||||||||||||| |||  |||||||| |||||||| ||||||||||||
Sbjct: 727 aagggtcccctctgcctctgtatgactagtactgtctgttgctgccacagagcacctctt 668

                                                                       
Query: 61  gccagacacagctctatccagtgagcagagtcttcgctttgtgctagaaccgtgctcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gccagacacagctctatccagtgagcagagtcttcgctttgtgctagaaccgtgctcact 608

                                                                       
Query: 121 gggactaggaggagacggcctcccttaacagtaagccttggctcttaattgctcctggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gggactaggaggagacggcctcccttaacagtaagccttggctcttaattgctcctggct 548

                                                                       
Query: 181 caagacatgtttgtcttctaggtctctgactgtgccttggccttgtctcatctctggggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 caagacatgtttgtcttctaggtctctgactgtgccttggccttgtctcatctctggggc 488

                                                                       
Query: 241 ccttgatgagcagggtgccacccacctaggcaggggaggcaggagagtaatggcagcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ccttgatgagcagggtgccacccacctaggcaggggaggcaggagagtaatggcagcttc 428

                                                                       
Query: 301 cacaaacaccctgcaactcactgagtgactttggatccaccccagagggggtcttctatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cacaaacaccctgcaactcactgagtgactttggatccaccccagagggggtcttctatt 368

                                                                       
Query: 361 tcatcatggagaggcaattacaagcttcaaccgccagaaggggaaactgaggctgggaga 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 367 tcatcatggagaggcaattacaagcttcaactgccagaaggggaaactgaggctgggaga 308

                                                                       
Query: 421 tgaatgatttcctcagggggcaagggtttgggtttcttcccttacaaagctcgtctggcc 480
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 307 tgaatgatttcctcagggggcaagggtttgagtttcttccctttcaaagctcgtctggcc 248

                                                          
Query: 481 accttgttctagcaaggtgagctttgtatagggctcagaccagaaca 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 accttgttctagcaaggtgagctttgtatagggctcagaccagaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no124_k05.g1 MSMg01no124_k05.g1 CHROMAT_FILE:
MSMg01no124_k05.g1 PHD_FILE: MSMg01no124_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:00 2005
         (274 letters)



>mm_chr1_93088865_93089538
          Length = 674

 Score =  507 bits (262), Expect = e-148
 Identities = 271/274 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcagcattgtctccgtctaggtttcagaggcagcagtccccagtggttacatttgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagcagcattgtctccgtctaggtttcagaggcagcagtccccagtggttacatttgcct 260

                                                                       
Query: 61  gcccatagagtcggccttttgactccaaagcttaaagtttgaggcagttttactgtttgt 120
           || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacatagagtcagccttttgactccaaagcttaaagtttgaggcagttttactgtttgt 320

                                                                       
Query: 121 tgttgcttgttctttatgagagattaggatgctcttccaattacaaaatgaaactactct 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tgttgcttgttctttatgagagattaggatgttcttccaattacaaaatgaaactactct 380

                                                                       
Query: 181 ctgcctgcggagctgcccgtggccccaatccacactctccaaggcaggaagggatgagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcctgcggagctgcccgtggccccaatccacactctccaaggcaggaagggatgagtt 440

                                             
Query: 241 tatgagtctagcagaagaaagatggggctgagca 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgagtctagcagaagaaagatggggctgagca 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information