BAC Information

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BAC

Clone NameMSMg01-124P04
Chromosome1 (Build37)
Map Location 85,261,138 - 85,261,414
singlet/doubletsinglet
Overlap geneC130026I21Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378
Downstream geneLOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124P04.T7 (MSMg01no124_p04.b1)MSMg01-124P04.TJ (MSMg01no124_p04.g1)
ACCAG334168AG334169
length1,2611,639
length of high quality
(start - end)
278 (128 - 405)---
definitionCHROMAT_FILE: MSMg01no124_p04.b1 PHD_FILE: MSMg01no124_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:44 2005CHROMAT_FILE: MSMg01no124_p04.g1 PHD_FILE: MSMg01no124_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:44 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GAAACCTNNNNAAACATTGGGCGCTAACGACTCCTATGGGAGAGGATCCG
CGGAATTCAGAAAGAAAGAAAGACCATAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGCCATAGAGAGAGCGAGAGAGAAAGAAAGGAAGGAAGG
AAGAAAGAATCATAAAATGTTTTACTAAAACCAAAAGGGCTTAAAAAGAA
AGGAAAGCCAAAAAAAAAAAAAGAGTAAAATGAAAATATTTACAAACATG
GTAGGTATTTCTCTGTGTCCATAAAGAGTCAAAATGTGGATAATTTAATA
ATAGCACAATTATAAAACAGAGTACGTTTAAAAACTGTAACTAATGTAAA
TAAAAGAGGGTCTGGGAGGATGGCTCAGCTGATACAGGCCTTGCCACCAA
GTCTGTGTTTTTGAGCTTGCTCCCCTAAGAACTAACTACACGGTAGTAGG
AGAGAATTTTTTTTTCCCCCCCCCACTCTGATCTCCCCCCACACATTAGA
GGAGCTGCACACATACAATAAATAAATGAATGTAATTTTTTTAAAATGGG
GTAAGACAAGCAAAAGTGTGACCCTTTCTCCTACACTAAAAAAGCACTGA
AGTCTAAAAATTATTAAATCTGAGACACAGCCAAGTCCGTGGCTAATGGG
AAACATACAGCTTTGTATGTGTCACAAGCTAACAGAGGCATAAATGAACA
ATCTTATGAGCAATGATTTCCTCCCCATTGAACACCAAGATTCCCTGACA
CTAAAGTACAACATCCATATAATTCAAAGAAATGCCTCTTATGCTCCCAT
CCTTTCGTAAAGATCAATACCTTTACTAAATCCTCTACTCACGCTACTGG
ACGCTAACACCCGACCCCCCCCTTTGTATCTCCCCCCCACCTGTGCCCGG
TCATCCTCCATATTAATGCCCTCCCTTCCCTACCCCCTGTCCTAATTGTT
TATCCCCTCCTTACTCGCCCCCTTCCAAGACCCTTCACCTGTCTACCCCT
TCCCACACCCTACTCCCTCCCCCTGGCTTTATTCTACAAGTCCTCTCTAT
CCATTTGTCTACCCCCCCTCATTTTATTCTCCCCAATCACCCTACCCTCT
CCTGTTTGGCACTCCCCTCTCGTACATCTTGCCTCACTTTTCCCACCCTT
CAAACAAGTGTGCTTCTCTCTTAACGACACTCTCTTCCCGTCCACCTAAT
TATCATCTCCCTCGTACCAGCTTCCCTCCGGTCTGCCTCTCCCTCTTCTT
ACACCTTCCCC
NNCGAGTTGNNNNNNNGAAGTGATTGTTAGTTGTGAGGNCGCCGGGNNCN
NCGACATTTTAGGATGTACACTATAGCAAGGTATACCGCGCCCTTTCTTT
GAGCACATTAGNACTAGATGGATCGCCCCGTAGTGAGANTGCCCTCTTTT
AGAATACCGCCTGTTTGAGAGGACCTTTAGAGGAATTTCATTCGTTTAGT
GTGTTTCTTCTTTTATAATGTGTTTATTTTGATTGCTCTCCCTTTTTTTA
GAGAAAAATTACTTAATTTTCTCTTGGTTTTGTGATTAATTTGTATAATT
ATTATTTATTTTTTTATTATTATTTATTTTCTTATTTTAAATCTTTCCAT
GTTTTTTTTTTTCTTCTTCTTTAAGAAAGAGGAGGATTTTTTTTTTTTTA
TTCTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTTATTCCTTTTCTATT
TTTATATTCCTTTTTTATTTATTGTTTGTTATATTTTATTTAATTTATCT
TTCTTTTCAAATTTTTTTTTTTTTTTTTTATCATCACACATATTTCTTTT
TCTCTTTTTTTTTTTTGTAGGAGAGAAAAAAAAGCCCTTTTTTTTTTTTT
TTCCCCCCCCCCCCCAGGGAGGGANNNNNNNNNNNTNNTAAAAAAAAAAA
AAAAAGAANNNNGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTNNTNNTNTTNTTTTTTTTTTTTTTTTTTTTTTTTTCTTNNTT
TTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTNTTTTNTTTN
TTTTTTTTTTTTNTNNTTTTTTTTNTTTTTTTTNNTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTT
TTTTTTTTTTTTNTTTTTNTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTGTTTTTNTTTTTTTTTNTTTTTTTTTTTTTTTNNNTTTTTTTTT
TNTTTTTNTTTTNTTTTTTTTTTTTTTTTNTTTTTTTTTTTNTTTTTTNN
TTTCCTTTNTTNNTTTTTTTTTTTNNTTTTTTTTTCCTTTTNTTTTTTTT
TTTTNTTTTTNCTTTTTTTTTTTTTTTTTTTNTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_p04.b1 MSMg01no124_p04.b1 CHROMAT_FILE:
MSMg01no124_p04.b1 PHD_FILE: MSMg01no124_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:44 2005
         (278 letters)



>mm_chr1_85260938_85261615
          Length = 678

 Score =  505 bits (261), Expect = e-147
 Identities = 273/277 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagagaaagaaaggaaggaaggaagaaagaatcataaaatgttttactaaaaccaaaag 60
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagagaaagaaagaaacgaaggaagaaagaatcataaaatgttttactaaaaccaaaag 260

                                                                       
Query: 61  ggcttaaaaagaaaggaaagccaaaaaaaaaaaaagagtaaaatgaaaatatttacaaac 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcataaaaagaaaggaaagccaaaaaaaaaaaaagagtaaaatgaaaatatttacaaac 320

                                                                       
Query: 121 atggtaggtatttctctgtgtccataaagagtcaaaatgtggataatttaataatagcac 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 atggtaggtatttctctgtgtccataatgagtcaaaatgtggataatttaataatagcac 380

                                                                       
Query: 181 aattataaaacagagtacgtttaaaaactgtaactaatgtaaataaaagagggtctggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattataaaacagagtacgtttaaaaactgtaactaatgtaaataaaagagggtctggga 440

                                                
Query: 241 ggatggctcagctgatacaggccttgccaccaagtct 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatggctcagctgatacaggccttgccaccaagtct 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)