BAC Information

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BAC

Clone NameMSMg01-124P13
Chromosome1 (Build37)
Map Location 84,091,389 - 84,091,716
singlet/doubletsinglet
Overlap gene5033414K04Rik
Upstream geneCcl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream geneLOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124P13.T7 (MSMg01no124_p13.b1)MSMg01-124P13.TJ (MSMg01no124_p13.g1)
ACCAG334185AG334186
length1,2481,285
length of high quality
(start - end)
337 (116 - 452)332 (123 - 454)
definitionCHROMAT_FILE: MSMg01no124_p13.b1 PHD_FILE: MSMg01no124_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:48 2005CHROMAT_FILE: MSMg01no124_p13.g1 PHD_FILE: MSMg01no124_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTAACTATGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
TCCCATATACAGACACCCTTTAAAGACACTATTGCTGATGCCAAGAAGTG
CTTGCTCCCTGGAGCCTGATATTGCTGTCTCCTGAGAGGCTTTGCCAGAG
CTTGACAAATACAGATGTGGATGCTCACAGCCAAACACTGGACTGAGAAC
TGTGTCCCCAAAGAAGTAGTTAGAGAAAGAACTAAAGGAGCTGAAGGGGT
TTGCAAGCTGTATGAAGAACAACAATATCAACCAACCAGATCCCCCAGAG
CTCCCAGGGACTAAACCACCAACCAAAGAGTATACATTTAGGGATCCATG
GCTCCAGCTGCATATGTAGCAGAGGATGGTCTTATCTGGCATCAATGGTG
TATGGGCCTTTGATCCTGTGAAGGCTAGATGCCCCAATGTAGGGGAATGC
CATGGCAGCGAGGCAGGAGTGGTGGGGGGAGTATCCTCATAGAAGCAGGG
GGAGGAGAGATGGGATAGGATGATTGTGGAGGGGAAACCAGAAAAGGAGA
TAACATTTGGAGTGTAAATAAATAAAATATCCAATAAAAATAAAAATAAA
TAAGTTAGAAACTTTAAAAAAAAGAATTTTCAATCTTCTCATACACATAT
CCCACAAAGCCCTCCTATGTTGTCTGTAGGAAAGTAAGGGCACATACACG
TGCAATGTAAGCCTTTCCTAGAGTCAGGTTGGAATCCTGACTTTATCCTT
TGTTGACTTCGTTGACCTGAAAGCACATCTCTGTTTTCCTTTCCTGGAAT
AAAAGATGGTTTTTCATCATTCTGGCGATTCCCTCATAATATTGGACCTT
TGTTTACCATATTAACCATCTATTCCCCTCCCTGTTTATTTACCTCTAAA
AATTTCCCCACTGCTACAAAGTACACCGGTTCTATTATCTTATTTCTCCC
CTTTTTTATTAATTCCTCAATTCGTTAATACCCCTAATGCTCCTCATTTA
TCTCTAGCTTTCTCAAACACTGCGTTCACTTTTCTCCACGTTCCTTATTC
CCTTCTATTTATCCCTTTTATTTTCTTCTATTTTCTACCCACCTTGCATT
CTCTTTATCCATTAGTCTTCTTCTAGTCGCAATATATCCATCTCCTTTCT
TATCCATTTTGCTATTCTCCTCTCTATATCTCTTGTCTCTTCACCTTTAT
TCTTCAACTATCCTACTAACTCCTTCTCTTTTTATCCATATACCTTTC
TTCACCACATTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTTTGTACTTAATGATGGTGAAAGAGAGAC
AGGGAGGACCATATAACATCCCTAAAAGTGACTCACATCAGTTGCACTGA
CATGTGGCAGTCATGTGACCCATCTTAGGCCAACAGCTAAGGACTGTACT
ATAGTAGAGTATCCCAGCTCATGTGGATGGACTTGGATGGATACTGTGTG
CACCTTTCAAACCTAGAGACTTAATATTAAAACTTGTGATCTGGAGAGCA
AGTGCTATTGTGTGATCAACTTTCTGTAAACGTCACTTTAAGAGGCTTTA
CCAGAGCCAGGATGGTGGTGGCACACGCCTTTAATCCCAGCACTTGGTAG
GTATAGGCAGGTGGATTTCTGAGTTCAAGGCCATCCTGGTCTACAAAGTA
AGTTCCTGCACAGCCAGGGCTACACAGAGAAACCCGGTCTTGGGGGAAAA
AAAAAGAGGCATTACTAGGCTGGCTATGGCCACACACACACACACACACA
CACACACACACACACACACACACACACACACACTCAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGAGAGGTGAAAAAA
AGAATTATTATCTAGATGGTTTTATAGAGTGTAATCAGAGAGAGTTAGTT
CCTTTGAAATTTGCTGTCTGTTGGGCAAAGCTTATTCTTCCTGCCTGAAA
AATCTCTTGTCTCTCCAAGGTGCTTATTTTTCCCAAATCCTCTATGAAAG
TGTGCCCCGTTACCCTGTGAAATGTTGTATGTCAAAGTATATCACCCTGG
ATCCCTTCCTTGCTCCCTGCATTATGTACTTTTTGCTTACTTTCTGAACC
CTTTCTGGCTATATTCCTGCTCTCCCTCAACTATTCCCCCTATTTTAATA
CCTACCTTGCAATTCATGCCTGCCTCTTTTCCTAATATATCTCCGTTTCA
ATTGACCCACAATCTTGAATTTTCTTAATCCCTTATTGTGCTCCCTCTTG
CCTGGAAAAAAACTTTCCGTGGTGGTCTCCCTCTACTCCTACGTTGCTCG
TCTTTCAAAATAACTCCATTTTGTCTGTTTTTTTTCCTGAAAAAAAAACC
CTCCCTGCTCCTCTTTTTCTCTCCAATTTTCTTATTCTAGGATTTCTCAG
CTCTCGATTTCCTCTTCCATGGTCTATTCATCATCTATATTCTACTCTCC
ATCATATCTACTCTACCCTCACTATCCTTCAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_p13.g1 MSMg01no124_p13.g1 CHROMAT_FILE:
MSMg01no124_p13.g1 PHD_FILE: MSMg01no124_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:48 2005
         (332 letters)



>mm_chr1_84091289_84092016
          Length = 728

 Score =  569 bits (294), Expect = e-166
 Identities = 321/332 (96%), Gaps = 4/332 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaagtgactcacatcagttgcactgacatgtggcagtcatgtgacccatcttaggcca 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 taaaagtggctcacatcagttgcactgacatgtggcagtcatgtgacccatcttaggcca 369

                                                                       
Query: 61  acagctaaggactgtactatagtagagtatcccagctcatgtggatggacttggatggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 acagctaaggactgtactatagtagagtatcccagctcatgtggatggacttggatggat 309

                                                                       
Query: 121 actgtgtgcacctttcaaacctagagacttaatattaaaacttgtgatctggagagcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 actgtgtgcacctttcaaacctagagacttaatattaaaacttgtgatctggagagcaag 249

                                                                       
Query: 181 tgctattgtgtgatcaactttctgtaaacgtcactttaagaggctttaccagagccagga 240
           ||||||||||||||||||||||||||||||    |||||||||||||||||||||| |||
Sbjct: 248 tgctattgtgtgatcaactttctgtaaacg----tttaagaggctttaccagagccggga 193

                                                                       
Query: 241 tggtggtggcacacgcctttaatcccagcacttggtaggtataggcaggtggatttctga 300
           ||||||||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct: 192 tggtggtggcacatgcctttaatcccagcacttgggaggcagaggcaggtggatttctga 133

                                           
Query: 301 gttcaaggccatcctggtctacaaagtaagtt 332
           ||||||||||||||||||||||||||| ||||
Sbjct: 132 gttcaaggccatcctggtctacaaagtgagtt 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 728
Length adjustment: 9
Effective length of query: 323
Effective length of database: 719
Effective search space:   232237
Effective search space used:   232237
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)