Query= MSMg01no125_b19.b1 MSMg01no125_b19.b1 CHROMAT_FILE:
MSMg01no125_b19.b1 PHD_FILE: MSMg01no125_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:03 2005
(543 letters)
>mm_chr1_107361440_107362382
Length = 943
Score = 990 bits (512), Expect = 0.0
Identities = 536/544 (98%), Gaps = 2/544 (0%)
Strand = Plus / Plus
Query: 1 tgttcttag-aacactttctgagcctatgatgtaatgcagatacagtctcagatttaatt 59
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttcttagaaacactttctgagcctatgatgtaatgcagatacagtctcagatttaatt 260
Query: 60 ctttagtttgtcagttctaagacactcttaactctgacctatatctggctttgtaaacag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttagtttgtcagttctaagacactcttaactctgacctatatctggctttgtaaacag 320
Query: 120 caaaggaagaaaagaaaaaaaaaactattatctaaactatgcaagttctctccctcaccc 179
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagaaagaaaag-aaaaaaaaactattatctaaactatgcaagttctctccctcaccc 379
Query: 180 tctccctctcttatttcctccctctcctttcccactgtctctctgtctatgtgtgtgttc 239
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 380 tctccctctcttatttcctccctctcctttgccactgtctctctgtctgtgtgtgtgttc 439
Query: 240 atgtgtgcatttgtgtgtgtacatgtttgtgttgcacatagtccaagcatattttctttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgtgtgcatttgtgtgtgtacatgtttgtgttgcacatagtccaagcatattttctttt 499
Query: 300 ttataagacattttctttatttggatttcaaatgttattccctttccttgtttcccctcc 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttattagacattttctttatttggatttcaaatgttattccctttccttgtttcccctcc 559
Query: 360 taaaacccccattccttccctctttcctactcaccaacacacacattcctactttcctgt 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taaaaccctcattccttccctctttcctactcaccaacacacacattcctactttcctgt 619
Query: 420 cctggcattctcctacactggagcatagagccttcacagtaccaagatcctctgctctca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cctggcattctcctacactggagcatagagccttcacagtaccaagatcctctgctctca 679
Query: 480 ttgatgcccaacaaagccatcctctacgacatatgcaactggagtcatggatccctctgt 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 680 ttgatgcccaacaaagccatcctctactacatatgcaactggagtcatggatccctctgt 739
Query: 540 gtgt 543
||||
Sbjct: 740 gtgt 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_b19.g1 MSMg01no125_b19.g1 CHROMAT_FILE:
MSMg01no125_b19.g1 PHD_FILE: MSMg01no125_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:03 2005
(509 letters)
>mm_chr1_107530605_107531513
Length = 909
Score = 420 bits (217), Expect = e-121
Identities = 278/329 (84%), Gaps = 50/329 (15%)
Strand = Plus / Minus
Query: 231 tattgggtcctcaagacccatatcaggcagcttgcaactgcctataactccagtttcagg 290
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 909 tattgggtcctcaagacccatatcatgcagcttgcaactgcctataactccagtttcagg 850
Query: 291 acaccgaacatacttttctggctttcat------------------gcacacacacacac 332
|||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 849 acaccgaacatacttttctggctttcatgcacacacacacacacacgcacacacacacac 790
Query: 333 acaca------------cacacacacacacacacacacacacgcacacacacacacaca- 379
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 acacacacacacacatgcacacacacacacacacacacacacgcacacacacacacacat 730
Query: 380 ------------------a-aactaataagtatttttttaaagggagaaaagaatgcaac 420
| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gcacacacacacacacacacaactaataagtatttttttaaagggagaaaagaatgcaac 670
Query: 421 taaaactttaaagataaattgaagaagaatggttctggataggaggcagttcttctaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 taaaactttaaagataaattgaagaagaatggttctggataggaggcagttcttctaaac 610
Query: 481 tagaatagtgaatgaatagagctgtagtc 509
|||||||||||||||||||||||||||||
Sbjct: 609 tagaatagtgaatgaatagagctgtagtc 581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 100
Number of extensions: 14
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
