Query= MSMg01no125_k05.b1 MSMg01no125_k05.b1 CHROMAT_FILE:
MSMg01no125_k05.b1 PHD_FILE: MSMg01no125_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:44 2005
(288 letters)
>mm_chr1_67170609_67171296
Length = 688
Score = 532 bits (275), Expect = e-155
Identities = 284/287 (98%), Gaps = 1/287 (0%)
Strand = Plus / Plus
Query: 1 gcatagtaggctgactaaaaattgtcctggtgctccttagattcctttttttttttttt- 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gcatagtaggctgactaaaaattgtcctggtgctccttagattccttttttttttttttt 259
Query: 60 gacatttgactctttttttttttccattttttattaggtatttagctcatttacatttcc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gacatttgactctttttttttttccattttttattaggtatttagctcatttacatttcc 319
Query: 120 aatgctataccaaaagagattcttttgcttataatgccttggtcaggatttcaggggctt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatgctataccaaaagagattcttttgcttataatgccttggtcaggatttcaggggctt 379
Query: 180 tggattctggcatgtgtgggaacaggcaatttctataggttcttatagattccagggaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggattctggcatgtgtgggaacaggcaatttctataggttcttatagattccagggaca 439
Query: 240 ggagagagactttagaagactggtgggagagaaaaagagggtggaag 286
|||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 440 ggagagagacataagaagactggtgggagagaaaaagagggtggaag 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no125_k05.g1 MSMg01no125_k05.g1 CHROMAT_FILE:
MSMg01no125_k05.g1 PHD_FILE: MSMg01no125_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:45 2005
(288 letters)
>mm_chr1_67249314_67250001
Length = 688
Score = 553 bits (286), Expect = e-162
Identities = 286/286 (100%)
Strand = Plus / Minus
Query: 1 ttaaaggcactgtaaatgatattgaatttaataaccaaccattctgtgtatttataaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttaaaggcactgtaaatgatattgaatttaataaccaaccattctgtgtatttataaaat 427
Query: 61 ttcatatatttcccactttttaaaaatgcactcaacattcatctgtgcaaagattttgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttcatatatttcccactttttaaaaatgcactcaacattcatctgtgcaaagattttgga 367
Query: 121 aaacagttattctctttactattgtaatccttgtttctgactattttgagtttattgtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaacagttattctctttactattgtaatccttgtttctgactattttgagtttattgtaa 307
Query: 181 gtaccactaagattttgaggcttaaaaaacaaatttcccattaagcatatgcataaagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtaccactaagattttgaggcttaaaaaacaaatttcccattaagcatatgcataaagct 247
Query: 241 cccatgtaacagacgtcaaggaaattataaagaggatccatgttga 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cccatgtaacagacgtcaaggaaattataaagaggatccatgttga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
