BAC Information

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BAC

Clone NameMSMg01-125L10
Chromosome1 (Build37)
Map Location 99,494,940 - 99,495,439
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346
Downstream geneD1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125L10.T7 (MSMg01no125_l10.b1)MSMg01-125L10.TJ (MSMg01no125_l10.g1)
ACCAG334731AG334732
length718707
length of high quality
(start - end)
618 (44 - 661)329 (72 - 400)
definitionCHROMAT_FILE: MSMg01no125_l10.b1 PHD_FILE: MSMg01no125_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:50 2005CHROMAT_FILE: MSMg01no125_l10.g1 PHD_FILE: MSMg01no125_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTCATTACAGGATGAGAAACAGACTAAGTGTGGGGTCATCCAAAG
TGAAATCAGTTCTGACGGCTGGAAGCCAGGATCCAAGTGTTGGCAAGTTT
CATTTCTTCTGAATCATGAGAGTCCCCTCTTTTTGGATTGTAAGTGTCTG
TGGGATTTTATTTGTTGGGCAATTTGAGATAGGATCTCACTGTATAGCTG
AGCCCAGGCTAGACTTATCTGGAACTTTCTATGCAGCTTAGATGACCAAA
ATATGAGTGATCCTCTGTCTTGATGTCTTCTGTTCCTAGATTACGATCAT
GAGCAACCACATATGCTCAAAGTCAACCACCTTTTGCATCTATTCATGTT
TTTCCTTGTGTCTCCTCTATTTAGAGCCTCTTTTGTACCAGTTCCATCAG
GTTAGGCTCCACTCTAATGTTCTTATTTGAATCTGTCATCCCCTCACATA
CTATCTTCTAGCACAGTCCCACTCTGAGATTCTAAAGATGGGCACCATGT
GGTTTACAGGCACCATTTTCCAGTACCGCCCCTTTCTGGGATACTGCAGA
TGACAACTTTTTATGGTTTAGATGTGACTTGTGTCCCATCATGCTTTAAA
ACTTTGGTTCTTACAGAAGAACTACAGGGAGGTAGTTGTGGAAGCTCTAA
CAGTAGGATATTAGTAAN
CATTATAGTXXXXXXXXXXXXXXXXXXXXXTTCAAAACATGGAGGTGACC
TATAGAATTACCAGCAAAATTCAAGACTATTCCTGATTTCCCTTTTATCA
GGTTGAATGTGAACAGTTTCATGTTTTAAAGTCTTTTATCTATTTGTGGC
TGTGTTGTGTGTAGACTGACATATATGAAAGTATTTGCATTCTTATATAT
GAAAACATCCTGTTTGAGCATCACCATTTATGGAAAATGCTTTCTTAATT
CCTGTGTGTGTTTCTTGCTTTTTTTTTTTAACCACAAATCAGGTAGCCAT
AGAAATGTAGATTCATGTTTCGGTCTTCAGTTTGATTCCACTGAGCAATT
TGTCTGTTTTTATGCCAATGCCACTTCATTTTTATTCCTAAAAATCTGTA
GTGCATGTTGAAATTGGAAATTGCAATACCACTAGCAACTATTCAATTCT
TTTACACATCCTGTTTTGTGTCTGTGGGTGTACATGTTTCTACATGAGTC
TGAAAACTGTCATTCAAAGTCTGTGAAGAATTGTGCTGGAATTTTGATGG
AGATTGCACTTTTATCTGTAAAGTGTTTTTACTAGGATGATCATTTTTAC
TAGGTTAATCTATCAATTCATGAGTACCGGATATCTTTTGATCTGATGTT
TCTTTCAATACTTCAAAGACTTGACACTCCTACTCTACAAATCTTTTATT
TTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_l10.b1 MSMg01no125_l10.b1 CHROMAT_FILE:
MSMg01no125_l10.b1 PHD_FILE: MSMg01no125_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:50 2005
         (618 letters)



>mm_chr1_99494422_99495439
          Length = 1018

 Score =  951 bits (492), Expect = 0.0
 Identities = 498/500 (99%)
 Strand = Plus / Minus

                                                                        
Query: 119  aatcatgagagtcccctctttttggattgtaagtgtctgtgggattttatttgttgggca 178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 aatcatgagagtcccctctttttggattgtaagtgtctgtgggattttatttgttgggca 959

                                                                        
Query: 179  atttgagataggatctcactgtatagctgagcccaggctagacttatctggaactttcta 238
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 958  atttgagataggatctcactgtatagctgagcccaggctaggcttatctggaactttcta 899

                                                                        
Query: 239  tgcagcttagatgaccaaaatatgagtgatcctctgtcttgatgtcttctgttcctagat 298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898  tgcagcttagatgaccaaaatatgagtgatcctctgtcttgatgtcttctgttcctagat 839

                                                                        
Query: 299  tacgatcatgagcaaccacatatgctcaaagtcaaccaccttttgcatctattcatgttt 358
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 838  tacgatcatgagcaaccacgtatgctcaaagtcaaccaccttttgcatctattcatgttt 779

                                                                        
Query: 359  ttccttgtgtctcctctatttagagcctcttttgtaccagttccatcaggttaggctcca 418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778  ttccttgtgtctcctctatttagagcctcttttgtaccagttccatcaggttaggctcca 719

                                                                        
Query: 419  ctctaatgttcttatttgaatctgtcatcccctcacatactatcttctagcacagtccca 478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718  ctctaatgttcttatttgaatctgtcatcccctcacatactatcttctagcacagtccca 659

                                                                        
Query: 479  ctctgagattctaaagatgggcaccatgtggtttacaggcaccattttccagtaccgccc 538
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658  ctctgagattctaaagatgggcaccatgtggtttacaggcaccattttccagtaccgccc 599

                                                                        
Query: 539  ctttctgggatactgcagatgacaactttttatggtttagatgtgacttgtgtcccatca 598
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598  ctttctgggatactgcagatgacaactttttatggtttagatgtgacttgtgtcccatca 539

                                
Query: 599  tgctttaaaactttggttct 618
            ||||||||||||||||||||
Sbjct: 538  tgctttaaaactttggttct 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)