BAC Information

Click to search

BAC

Clone NameMSMg01-125M10
Chromosome1 (Build37)
Map Location 119,434,368 - 119,434,910
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5a
Downstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125M10.T7 (MSMg01no125_m10.b1)MSMg01-125M10.TJ (MSMg01no125_m10.g1)
ACCAG334776AG334777
length705780
length of high quality
(start - end)
543 (60 - 602)53 (76 - 128)
definitionCHROMAT_FILE: MSMg01no125_m10.b1 PHD_FILE: MSMg01no125_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:55 2005CHROMAT_FILE: MSMg01no125_m10.g1 PHD_FILE: MSMg01no125_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAGCATCCGCGGAATTCCAC
ACCAGTACTATATGACATCAAGCTTATGAAGCCTGAAGGATCAGTTTTTT
TAGCTATAGCTTTTTGTGAGACTCAGTAGAATCAACTTTCTCATAAAGTG
AGACATAATACACTAAGGTATGATTAACAAACGTATGCCTTTGCAATATC
AATTTCATAATCAAACCAACAAGGCAATGAATGGGCCCTGTTCTGTGGGC
TGTATTCCCAGAGTGCAATAGGGAAGTGTGCAGAGACCATGGGGGTAACT
GTGCAGTGGTTCTGGATCAAAATGAGGTATGTACACAGCAGGGGTTTTCC
ATGGGTATTCCACCACACTTTGGTTGAGAGCACATTAAGGAAAGGGCTAA
ATAGGGAGCCAGGTTTATTACATGACCCTGCATGGCCTGTGTCTAGCAAG
AACTCCAACTCATAGTCATGAGGCATTCAGTCTAGAACCCCTCCTTTCTC
ATGTCCCCTTTTCTGTCCTTCCCACTCACAGTGTTAGCTTCCTGTCTGGG
AAGACTCTCTTCTCTTAGTTTCAGAGAGCTCAGTAAGTGAAGGGAGGTGC
ATGTGCCCTGCAATGTCCAATAGAAATTCTACTGTGAGTCTTCCTGTCAT
CAAACAGTAATTAAGTAGTTCACTTTTAAAGGAAAAAAAATCAGTGTACA
ATAGG
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCCAAGAAGTGGGAGTGGGTG
GCTAGGGGAGTGGGTAGGGGAGTGGGTGGCTCCCCCTCTTCTCTCCTCTC
CCTTTCTTTCTTCCCCCTCCTTTTCTCTCCTTCCTCTTTTCTTTTTCTTT
CCCATCTCCTTTCCTTTCTCCCTCTCTTCTCTTCATACTCCCCTTTCCTT
TCCTCTTCTTTTTTTTTCTCTCCCTTTCCTTTTCCTTTCCCCCCCTTTTC
CTTCTTTTTCATTACCCCCCCCATCTTCTCTTTTTTTATCTAACCCTCCC
CACCCCTTACATACACCCTTAATTTCTTTTTCTTCCACCTCTTTCTACTC
CTTCTTCTCTCTTCTTCCCCTCTTCTCTTTCTTCCCCCTTCTATTCTTCT
CTTTCTTACTTCTCTCTCTTTTTCCCTTTCACCTCATATTTTTACTTCCC
TTTCCACCTCTCCTTCCTCCAACCCTTCCTATCCCTCTTCCCCGCTTTGC
TCTTCTTCTGTCTCCTACCCATCCTGTTTACTCTCTTTCTCTCCCCCTAC
TCTCTTATTTCTATACACTCCCCAATCCCTCTTCTATTTTTACCACAACC
TTTTCTCCACTTCCTTCCCCCCTCTACTCCTTCTCTTCCCCCTCCTCTTC
CCCCCCCCTCCTTCCCACCCTTTTCTCTTTCTCTCTCTTTTTCTCCCCCT
TTCTTTCCTTCTCTTCCTTCTTTCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_m10.b1 MSMg01no125_m10.b1 CHROMAT_FILE:
MSMg01no125_m10.b1 PHD_FILE: MSMg01no125_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:55 2005
         (543 letters)



>mm_chr1_119434168_119435110
          Length = 943

 Score =  957 bits (495), Expect = 0.0
 Identities = 531/543 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatgacatcaagcttatgaagcctgaaggatcagtttttttagctatagctttttgtga 60
           |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 743 atatgacatcaagcttatgaggcctgaaggatcagtttttttagctataactttttgtga 684

                                                                       
Query: 61  gactcagtagaatcaactttctcataaagtgagacataatacactaaggtatgattaaca 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 683 gactcagtagaatcaactttctcataaagtgggacataatacactaaggtatgattaaca 624

                                                                       
Query: 121 aacgtatgcctttgcaatatcaatttcataatcaaaccaacaaggcaatgaatgggccct 180
           |||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 623 aacgtatgcctttgcaatatcaatctcttaatcaaaccaacaaggcaatgagtgggccct 564

                                                                       
Query: 181 gttctgtgggctgtattcccagagtgcaatagggaagtgtgcagagaccatgggggtaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 563 gttctgtgggctgtattcccagagtgcaatagggaagtgtgcagagaccatggggataac 504

                                                                       
Query: 241 tgtgcagtggttctggatcaaaatgaggtatgtacacagcaggggttttccatgggtatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgtgcagtggttctggatcaaaatgaggtatgtacacagcaggggttttccatgggtatt 444

                                                                       
Query: 301 ccaccacactttggttgagagcacattaaggaaagggctaaatagggagccaggtttatt 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 443 ccaccacactttgcttgagagcacattaaggaaagggctaaatagggagccagctttatt 384

                                                                       
Query: 361 acatgaccctgcatggcctgtgtctagcaagaactccaactcatagtcatgaggcattca 420
           |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 383 acatgaccctgcatggcctgtgtctagccagaactccaactcatagtgatgaggcattca 324

                                                                       
Query: 421 gtctagaacccctcctttctcatgtccccttttctgtccttcccactcacagtgttagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtctagaacccctcctttctcatgtccccttttctgtccttcccactcacagtgttagct 264

                                                                       
Query: 481 tcctgtctgggaagactctcttctcttagtttcagagagctcagtaagtgaagggaggtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 263 tcctgtctgggaagactctcttctcttagtttcagagagctcagtaagtgaagagaggtg 204

              
Query: 541 cat 543
           |||
Sbjct: 203 cat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)